BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0075.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase matur...   417   e-118

>gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/363 (61%), Positives = 255/363 (70%), Gaps = 12/363 (3%)

Query: 1   LHSTAIPAVLVTVATSQGSTPREAGARMVFTADGQYDTIGGGHLEWRAAQIARDMLEADA 60
           +   A PAVLVTVA  QGSTPR  GARM++TAD Q+DTIGGGHLEWRAAQ+AR ML+A  
Sbjct: 11  MQRDATPAVLVTVAQIQGSTPRAPGARMLYTADTQFDTIGGGHLEWRAAQMARAMLQAPL 70

Query: 61  TVFGGIRKFERIALGPSLGQCCGGVVFLAFERIDQRVDTRAGSLLTELEQHWRNGVDVWR 120
               G R+ ERIALGPSLGQCCGGVVFL FERI    D  A      LEQ W +G D+WR
Sbjct: 71  GQLAGQRRLERIALGPSLGQCCGGVVFLCFERIA--TDDEAMRTWQALEQSWSSGQDLWR 128

Query: 121 AVALESDDPTLLYELEGEACELGAPDNGLDAEQFRHAGNTHVTQDRYGHRWLLDRCRAHQ 180
           AV L+     LL E   E     A  +GL  +       T + +D  G RWLLD C A +
Sbjct: 129 AVPLDHAGAQLLIEGNIEDLPPDAYAHGLPPDTLGQQRQTRLLRDAQGRRWLLDWCHASR 188

Query: 181 PQVVLFGAGHVGAAIVRVLATLPCRVLWVDERDDMFPADLPMQVTVEATDVPNAVVDMAE 240
           PQVVL GAGHVG AIV VL+TLPCRVLWVD R++MFP  LP Q+  EATDVPNA VDMA+
Sbjct: 189 PQVVLCGAGHVGQAIVAVLSTLPCRVLWVDAREEMFPPGLPPQIRTEATDVPNAAVDMAD 248

Query: 241 PGAYFLVMTHSHALDQQLSERILKREDIGWYGLIGSQTKRKQFEHRLLDRGITQEQLNKM 300
           PGAYFLVMTHSHALDQQLSERILKR+D+ W+GLIGS TKR+QFEHRL +RG +  QL ++
Sbjct: 249 PGAYFLVMTHSHALDQQLSERILKRQDVAWFGLIGSLTKRRQFEHRLAERGFSAAQLERI 308

Query: 301 TCPIGIPGIYGKEPASIALAVVAQLLQLWELQALRVVKAQQPSQPDRTDTFTARPPTHML 360
           TCPIGI GI GKEPASIA+AVVAQLLQLWE +  +     QPS         A   TH L
Sbjct: 309 TCPIGIDGIDGKEPASIAIAVVAQLLQLWEKR--QAAPELQPS--------PAVLATHAL 358

Query: 361 DGR 363
           DGR
Sbjct: 359 DGR 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,050
Number of extensions: 51449
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)