BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0074.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312562|ref|YP_003776654.1| guanine deaminase [Herbaspirill...   457   e-129

>gi|300312562|ref|YP_003776654.1| guanine deaminase [Herbaspirillum
           seropedicae SmR1]
          Length = 432

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/268 (82%), Positives = 240/268 (89%), Gaps = 3/268 (1%)

Query: 1   MNSHVQAYRASLLHFRNDPAFDEHATQWHSDGLLIVADGKIVAAGDYSKLAATLPAASSD 60
           MN+ + AYRASLL+F NDPAFDEHAT+WHSDGLL+V DGKI AAGDY++L+A+LP  +  
Sbjct: 1   MNTPLHAYRASLLYFTNDPAFDEHATRWHSDGLLLVQDGKIRAAGDYAELSASLPPEA-- 58

Query: 61  YVLFDYRGKIITPGFIDTHVHYPQTDIIGSPAPGLLPWLNTYTFPAERRFESGEHASEVA 120
            V  D RGKI+ PGFIDTHVHYPQTDIIGSPAPGLLPWL+ YTFPAERRF+  EHA+EVA
Sbjct: 59  -VTEDLRGKILCPGFIDTHVHYPQTDIIGSPAPGLLPWLDNYTFPAERRFQQPEHAAEVA 117

Query: 121 DFFLAELLRNGTTTAAVYCTVHPQSVDAFFTRSSELNLRMVAGKCLMDRNAPDFLRDTAE 180
           DFFLAELLRNGTT+AAVYCTVHPQSVDAFF  S   NLRMVAGKCLMDR+APDFLRDTAE
Sbjct: 118 DFFLAELLRNGTTSAAVYCTVHPQSVDAFFAASHARNLRMVAGKCLMDRHAPDFLRDTAE 177

Query: 181 SGVRESEELIQRWHNKGRQHYAITVRFAPTSTPQQLKLAGELATQYPDTYIQTHVAENTD 240
           SGVRESE LI RWHNKGRQHYAITVRFAPTST +Q+KLAGELA QYPDTYIQTHVAENTD
Sbjct: 178 SGVRESEALIGRWHNKGRQHYAITVRFAPTSTHEQMKLAGELAAQYPDTYIQTHVAENTD 237

Query: 241 EVKWVKELFPDSRSYLDVYDQYGLMRAR 268
           EVKWVKEL+PD+RSYLDVYD YGLMR R
Sbjct: 238 EVKWVKELYPDARSYLDVYDGYGLMRQR 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,564,675
Number of extensions: 67655
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)