BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0073.p
         (779 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein [He...   371   e-103

>gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 894

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/201 (90%), Positives = 188/201 (93%)

Query: 223 HARRDQKVARARHAAINALMRTDACSGLSATLAAVPDIERITTRIALLSARPRDLAGLRG 282
           HA RDQ+VARARHAAINALMRTDACSGLSATLAAVPDIERITTRIALLSARPRDLAGLR 
Sbjct: 326 HALRDQQVARARHAAINALMRTDACSGLSATLAAVPDIERITTRIALLSARPRDLAGLRA 385

Query: 283 GLQQLGSLRNYVAMCSRDADAPLLLALHDALATPAECLDLLERSIMLEPAAMVRDGGVIA 342
           GLQQLGSLR YV MC RDADA LL  LH+ LATP ECLDLLER+IMLEPAAMVRDGGVIA
Sbjct: 386 GLQQLGSLRAYVEMCGRDADASLLTQLHEDLATPVECLDLLERAIMLEPAAMVRDGGVIA 445

Query: 343 RGFDADLDELRGLSENAGQFLIDLETRERARTGIANLRVEYNKVHGFYIEVTHGQTDKVP 402
           RGFDA+LDELRGLSENAGQ+L+DLE RER RTGIANLRVEYNKVHGFYIEVTHGQTDKVP
Sbjct: 446 RGFDAELDELRGLSENAGQYLLDLEARERERTGIANLRVEYNKVHGFYIEVTHGQTDKVP 505

Query: 403 DDYRRRQTLKNAERYITPELK 423
           +DYRRRQTLKNAERYI PELK
Sbjct: 506 EDYRRRQTLKNAERYIIPELK 526



 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 165/211 (78%), Positives = 179/211 (84%), Gaps = 9/211 (4%)

Query: 574 DLAGGRSTFMVEMTESASILNNATENSLVLMDEVGRGTSTFDGLALAWAIAKHLIDATRS 633
           DLAGGRSTFMVEMTESA+ILNNATE+SLVLMDEVGRGTSTFDGLALAWAIAKHLID TRS
Sbjct: 680 DLAGGRSTFMVEMTESAAILNNATEHSLVLMDEVGRGTSTFDGLALAWAIAKHLIDVTRS 739

Query: 634 FTLFATHYFELTQLPEVHPTASNVHLSAVEHKDSIVFLHAVQAGPASQSYGLQVAQLAGV 693
           FTLFATHYFELTQLPE+HPTA+NVHLSAVEHKDSIVFLHAVQ+GPASQSYGLQVAQLAGV
Sbjct: 740 FTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQSGPASQSYGLQVAQLAGV 799

Query: 694 PTPVIRAARKHLAALETQSVQTTPQFDLFSAPV-----RLDENDA----HAAPSAHVDPA 744
           P  VIRAARKHL+ALE+QS+Q TPQFDLFSAP        DE D       + +   DP 
Sbjct: 800 PAQVIRAARKHLSALESQSMQATPQFDLFSAPAFATPGTQDEPDPADERSESDAVEPDPL 859

Query: 745 VQAVADALADIDPDTMTPRQALDALYRLKQL 775
            QA+   LA IDPD +TPRQAL+ALY+LK L
Sbjct: 860 AQALLQTLAQIDPDALTPRQALEALYQLKAL 890



 Score =  321 bits (823), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/208 (74%), Positives = 175/208 (84%)

Query: 21  HTPMMVQYLRIKAEYPTTLVFYRMGDFYELFFDDAEKASRLMGITLTQRGSSNGSPIKMA 80
           HTPMM QYLRIKA++P TLVFYRMGDFYELFF+DAEKASRLMG+TLTQRGSSNG+PIKMA
Sbjct: 8   HTPMMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGTPIKMA 67

Query: 81  GIPFHSVDQYLVKLIKLGESVAICEQIGDPATSKGPVERKVVRVITPGTLTDSDLLPEKS 140
           G+PFHSV+QYL +LIKLGESVAICEQIGDPATSKGPVERKVVRV+TPGTLTDSDLLPEK+
Sbjct: 68  GVPFHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEKA 127

Query: 141 ERPLLAVNLAASKQRKTVTVGLAWLSMASGALKLMEFSAEPALLEARLKQELERISPAET 200
           ER LLA+ L  SK RK + VGL+WLSMASGALK+MEF+ E ALL+ R+KQELERIS AE 
Sbjct: 128 ERCLLAMQLVPSKSRKQMQVGLSWLSMASGALKMMEFTVEAALLDGRVKQELERISAAEV 187

Query: 201 LLGDSEEAAYAHLLSGKPTTXVHARRDQ 228
           L+ D +      LL  +  T      DQ
Sbjct: 188 LVADGQLEWCEPLLPNRAVTVPDWHFDQ 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,283,559
Number of extensions: 94526
Number of successful extensions: 298
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 3
Length of query: 779
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 686
Effective length of database: 1,179,515
Effective search space: 809147290
Effective search space used: 809147290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)