BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0070.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273...   516   e-147

>gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  516 bits (1329), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 287/349 (82%)

Query: 1   LLVRQAIPAFQAPLTRQQVFDLAGRDDVESRLITQNGKDWKMEHGPLAKLPPLKQKEWTM 60
           LL+R AIP F APL RQ++FDL+ RDDVESRLIT     W M+HGP  KLPPLKQK WT+
Sbjct: 38  LLIRNAIPGFSAPLPRQELFDLSRRDDVESRLITHREGGWDMQHGPFNKLPPLKQKAWTL 97

Query: 61  LVQGVNLYDDAADALLREFRFIPDARLDDLMISYASDGGGVGPHFDSYDVFLLQAHGQRR 120
           LVQGVNL+  AADALLR+FRF+PDARLDDLMISYASDGGGVGPHFDSYDVFLLQAHGQRR
Sbjct: 98  LVQGVNLHHPAADALLRQFRFVPDARLDDLMISYASDGGGVGPHFDSYDVFLLQAHGQRR 157

Query: 121 WRISAQKDLSLVDGMPLKILKNFKPAEEFVLEPGDMLYLPPHYAHDGVAIGECMTYSIGF 180
           WRISAQ DL+L +G+PLKIL +F+  EEFVLEPGDMLYLPPHYAHDGVA+GECMTYSIGF
Sbjct: 158 WRISAQDDLTLEEGVPLKILSHFQAEEEFVLEPGDMLYLPPHYAHDGVAVGECMTYSIGF 217

Query: 181 RAPAFQELGEAFLQFMADSIDLPGRYADPGLEPAKHSAELPEQLLTRVADEINKMRFTDD 240
           RAP +QELGE+FL+FM D+IDLPGRYADP L+ +   AEL   ++ R+ DE+NK+RFTDD
Sbjct: 218 RAPTYQELGESFLEFMMDTIDLPGRYADPDLKTSARPAELQADMIARIRDELNKIRFTDD 277

Query: 241 DITIFLGEYLSEPKATTYFDPVDKPLTPARFVQAANKRGIRLSRKTRMLYRGKHLFINGE 300
           DITIFLG++LSEPK + +F+   + L+ ARF Q A KRG+ L RKTRMLYRG H+FINGE
Sbjct: 278 DITIFLGQHLSEPKPSVFFEAPPQELSFARFFQGAKKRGLVLHRKTRMLYRGSHVFINGE 337

Query: 301 SFAVGRADKALLTVLADERQLDKTALAKASKDVLEAFHNWYQDGWLELA 349
           SF V R DKA+L  LAD+R L+K     AS+D+LEA H W++ GW+E  
Sbjct: 338 SFQVSRQDKAILARLADQRMLEKNDFDLASEDLLEALHQWHESGWIEFV 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,157,625
Number of extensions: 50135
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)