BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0068.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312571|ref|YP_003776663.1| metal-dependent hydrolase [Herb...   341   4e-95

>gi|300312571|ref|YP_003776663.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  341 bits (874), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/248 (68%), Positives = 195/248 (78%), Gaps = 7/248 (2%)

Query: 1   LKFASLGSGSEGNALIISGTSG----ATTTTVMLDCGFGIKETERRLTRIGKLPQDINGI 56
           +KFASLGSGSEGNAL+IS  +G    ++ TTVMLDCGF ++E ERR+ R+G  P D++ I
Sbjct: 1   MKFASLGSGSEGNALLISAAAGDQRPSSGTTVMLDCGFTLREAERRMLRLGLDPSDVSAI 60

Query: 57  VVTHEHQDHVGGVFKFARRHRIPVWLTYGTFQAVGEEACKNVQLHFCRDSEAVVIGDLSL 116
           VVTHEH DHV GVFKFARR+RIPVWL+YGT+QAV ++A  +V + FC D + + IGDL L
Sbjct: 61  VVTHEHSDHVSGVFKFARRYRIPVWLSYGTWQAVADQA-TDVDVQFCADGQKLAIGDLEL 119

Query: 117 MPYTVPHDAREPVQYVAGDGKRKLGVLTDAGQSTTHLVQALGGCDALVLECNHDRQMLAD 176
            PYTVPHDAREP+QYVAGDG R+LGVLTDAGQ T HLVQALG CDAL+LECNHDR ML  
Sbjct: 120 SPYTVPHDAREPIQYVAGDGDRRLGVLTDAGQPTAHLVQALGACDALLLECNHDRDMLDR 179

Query: 177 SAYPPSLKRRIGGAYGHLANDTSAEILAALDKQKLKTVIGAHLSLKNNTPGLARARARAV 236
           S YP  LKRRIGG YGHLAND SAEIL  LDK +LK VIGAHLS +NNTP LARA    V
Sbjct: 180 SPYPAFLKRRIGGDYGHLANDASAEILRMLDKSRLKRVIGAHLSQQNNTPELARAALEGV 239

Query: 237 RRIGRTSG 244
             +G T G
Sbjct: 240 --LGMTFG 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,249
Number of extensions: 34361
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)