BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0067.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein [Herb...   601   e-173

>gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  601 bits (1549), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/354 (85%), Positives = 331/354 (93%), Gaps = 2/354 (0%)

Query: 1   MLEGDRIDYKSAEKAKGPRLEVPPDLTQLQRDNRYAIPESNKGVATASGYSLEQKTRPAT 60
           +L+GDRIDYKSAEKA+GPRLEVPPDLTQLQRDNRYAIPE+NKGVATASGY LEQ+TRPA 
Sbjct: 40  LLDGDRIDYKSAEKARGPRLEVPPDLTQLQRDNRYAIPEANKGVATASGYQLEQQTRPAN 99

Query: 61  DAAAVAPAAKGD-LRIERDGTQRWLVVSQTPEQLWGPIKDFWQDSGFLINVESQDTGVME 119
           +  +VAPAAKGD +RIERDG+QRWLVV QTPEQLW  IKDFWQDSGFLIN+ES DTGVME
Sbjct: 100 EITSVAPAAKGDEIRIERDGSQRWLVVKQTPEQLWPQIKDFWQDSGFLINIESPDTGVME 159

Query: 120 TDWAENRAKIPQDFIRNTLGKVFDSLYSTGERDKFRTRLERGPNGTTEIFVSHRGAEEVL 179
           TDWAENRAKIPQDF+RNTLGKVFDSLYSTGERDKFRTRLERGPNGTTEIF+SHRGAEEVL
Sbjct: 160 TDWAENRAKIPQDFVRNTLGKVFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVL 219

Query: 180 TGSAKETSVWTARPSDPGLEAEFLARLMVRLGAEETKAKAAVANAPTLQARSKLLKTANG 239
           TGSAKETSVWTARPSDPGLEAEFL+RLMVRLGAEETKAKAAVANAP+LQARS+L KTA G
Sbjct: 220 TGSAKETSVWTARPSDPGLEAEFLSRLMVRLGAEETKAKAAVANAPSLQARSRLQKTAAG 279

Query: 240 SSVQVDESFDRAWRRVGLALDRVGFTVEDRDRTQGLYFVRYVDQNQDAKDKESEGFFSKL 299
           +SVQVDE F+RAWRRVGLALDRVGFTVEDRDR+QG+Y+VRYVDQNQDAKDK+ EGFFS++
Sbjct: 280 TSVQVDEGFERAWRRVGLALDRVGFTVEDRDRSQGIYYVRYVDQNQDAKDKKDEGFFSRI 339

Query: 300 FSSKDKDKKAARYRIVVKGTG-DVSDISVQNNDGKQEVSQTADKILGLLNDQLK 352
           FSSKDKDKKAA+YRIVVKG G D S+I VQN +G  + S  +DKILGLLN+QLK
Sbjct: 340 FSSKDKDKKAAKYRIVVKGAGSDSSNIVVQNGEGGPDTSGISDKILGLLNEQLK 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,135
Number of extensions: 36902
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)