BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0065.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase [H...   771   0.0  
gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase [H...   175   7e-45

>gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/399 (91%), Positives = 386/399 (96%)

Query: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60
           MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS
Sbjct: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60

Query: 61  TWEMVIDWLAAGVDPSQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD 120
           TWEMVIDWLAAGVDP+QSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD
Sbjct: 61  TWEMVIDWLAAGVDPAQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD 120

Query: 121 RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQIPHIEMMREISRRFNHLYGKEKGFEEK 180
           RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQ+PHIE+MREI+RRFNHLYGKEKGFEEK
Sbjct: 121 RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFEEK 180

Query: 181 AREAVKKLGSKRSKLYQELRTQFQEQGNEEALEQAKAMLDDAQNLSMIDRERLFGYLEGS 240
           A  A KKLGSKR++LY ELRTQFQE+G++EALEQAKAMLDDAQNLSMIDRERLFGYLEGS
Sbjct: 181 ALAATKKLGSKRARLYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGS 240

Query: 241 RKLILTEPQALLTEASRLPGLDGAKMSKSYGNAIALREDKDSVTKKVRTMPTDPQRVRRT 300
           RKLILTEPQA+LTEASRLPGLDGAKMSKSYGNAIALREDK+SVTKKV+TMPTDPQRVRR+
Sbjct: 241 RKLILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALREDKESVTKKVKTMPTDPQRVRRS 300

Query: 301 DPGDPGKCPVWQFHRVYSDDAVRQWVDKGCRSAGIGCLECKQPVIDAILAEQQPMLERAQ 360
           DPGDP KCPVWQFH+VYS   V++W  KGCRSAGIGCLECKQPVIDAIL EQQPMLERAQ
Sbjct: 301 DPGDPDKCPVWQFHQVYSSAEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQ 360

Query: 361 QYIDDPSLVRAIIADGCDTARKLAQDTMRDVREAMGLGY 399
            Y+DDPSLVRAI+ADGC+ ARKLAQ+TMRDVREAMGLGY
Sbjct: 361 PYLDDPSLVRAIVADGCEKARKLAQETMRDVREAMGLGY 399


>gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 190/399 (47%), Gaps = 77/399 (19%)

Query: 6   VVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETSTWEMV 65
           V++G RPTG LHLGHY G+LK+ V LQ        +AD  A+T +      +  +  E+ 
Sbjct: 16  VLTGDRPTGPLHLGHYIGSLKSRVALQETSRQFLLLADTQAMTDNVGRHQKVTDNVLEVA 75

Query: 66  IDWLAAGVDPSQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQ-QEKLADRDLA 124
           +D+LA G+DP +ST+FIQS+V E  EL ++L     +  LER PT K++ + +  +RD+ 
Sbjct: 76  LDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPTIKEEIRLRGFERDIP 135

Query: 125 TYGFLGYPLLQAADVLIYRASQVPVGEDQIPHIEMMREISRRFNHLYGKEKGFEEKAREA 184
             GFL YP+ QAAD+  ++   VPVG DQ+P I                     E+  E 
Sbjct: 136 A-GFLTYPVSQAADITAFKGQLVPVGSDQLPMI---------------------EQTNEL 173

Query: 185 VKKLGSKRSKLYQELRTQFQEQGNEEALEQAKAMLDDAQNLSMIDRERLFGYLEGSRKLI 244
           V+K  +                                     +DRE            +
Sbjct: 174 VRKFNAT------------------------------------VDRE------------V 185

Query: 245 LTEPQALLTEASRLPGLDG-AKMSKSYGNAIALREDKDSVTKKVRTMPTDPQRVRRTDPG 303
           L E + +L+E  RLPG+DG AKMSKS GN+IAL      + + V  M TDP  +R  DPG
Sbjct: 186 LVECKEVLSETGRLPGIDGKAKMSKSLGNSIALGATPAEIKQAVHRMYTDPNHLRVDDPG 245

Query: 304 DPGKCPVWQFHRVY--SDDAVRQWVDKGCRSAGIGCLECKQPVIDAILAEQ-QPMLERAQ 360
                 V+ F   +    DAV +      R  G+G    K+  ++ IL E  +P+  R +
Sbjct: 246 QVEGNVVFTFLDAFDPDRDAVAELKAHYTR-GGLGDSVVKRR-LEGILQEMLEPIRTRRE 303

Query: 361 QYIDDPSLVRAIIADGCDTARKLAQDTMRDVREAMGLGY 399
           ++  D   V AI+  G + A  +A  TM +V  A+GL Y
Sbjct: 304 EFAKDRGEVLAILKRGTERASAVAAQTMSEVNAALGLNY 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,306,349
Number of extensions: 54264
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)