BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0063.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbas...   375   e-105
gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbas...    67   1e-12

>gi|300312576|ref|YP_003776668.1| translation factor SUA5
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  375 bits (964), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/208 (87%), Positives = 195/208 (93%)

Query: 1   MSQFFQIHPDNPQLRLVKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVD 60
           MSQFF+IHPDNPQLRL+KQAAQIIH GG+VALPTDSCYALVCQLDNKDAVER+RRIRGVD
Sbjct: 1   MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60

Query: 61  EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIG 120
           EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPG YTFILEATKEVPRRLSHPSRKTIG
Sbjct: 61  EKHHLTLLCRDLSEIAQYAKVDNRQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120

Query: 121 LRVPENQIAHALLAELGEPLIGTTLILPDQEDALTDAEEIRERLEKQIELVIDSGACSLE 180
           LRVPEN+IAH LL ELG+PL+GTTLILPD +  LT AE+IR  LEKQI+LVIDSGACSLE
Sbjct: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDDDLPLTSAEDIRSHLEKQIDLVIDSGACSLE 180

Query: 181 PTTVIDLSDDNEPVLVRQGRGDAAPFGL 208
           PTTVIDL+DD +PVLVRQGRGDA  FGL
Sbjct: 181 PTTVIDLTDDEQPVLVRQGRGDAGIFGL 208


>gi|300310011|ref|YP_003774103.1| translation factor SUA5
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 17  VKQAAQIIHGGGIVALPTDSCYALVCQLDNKDAVERLRRIRGVDEKHHLTLLCRDLSEIA 76
           V  AA+ +  GG+VA PT++ Y L    +N  A+  +   +G    H + +     ++I 
Sbjct: 16  VMHAARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIG 75

Query: 77  QY-AKVDNRQYRLLKAATPGPYTFILEATKEVPRRLSHPSRKTIGLRVPENQIAHALLAE 135
            + A V     RL+ +  PGP T IL+    +P  ++   + ++G+R P + +A ALL E
Sbjct: 76  YWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAG-GQDSVGVRCPAHPVAQALLRE 134

Query: 136 L--GEPLIGTTLILPDQEDALTDAEEIRERLEKQ----IELVIDSGACSLE-PTTVIDLS 188
              G+  I           + T AE +RE         ++ V+D G   +   +T++DLS
Sbjct: 135 FRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVGIESTIVDLS 194

Query: 189 --DDNEPVLVRQGR 200
             D + PVL+R G+
Sbjct: 195 RIDTHGPVLLRPGQ 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,802
Number of extensions: 27479
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)