BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0062.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   524   e-150
gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   408   e-115

>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  524 bits (1349), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/291 (87%), Positives = 277/291 (95%)

Query: 1   MKRIFLFLATNIAVLVVMSVILSLLGVDKFLTRAGLNLPMLLVFSIVVGFTGSIISLLMS 60
           MKRI LF+ATNIAVLVVMSVILSLLGVD+FLTR+GLNLPMLLVFS+VVGFTGSIISLLMS
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KTMAKWSTGARVIDTPVNSTEVWLVNTVSKLAQRAGIGMPEVAVYEGEPNAFATGAFKDS 120
           KTMAKWSTGARVI TP+N TE WL+ TV KLAQRAGIGMPEVAVY+GEPNAFATGAF+DS
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 ALVAVSTGLLQGMTKEEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVD 180
           ALVAVSTGLLQGMT++EVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVG+FVD
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFVD 180

Query: 181 AALRRGNDNSGPGIGYMVTVMVCQIVFGIGASMIVAWFSRHREFRADAGSAKLLGGPQPM 240
           +ALRR +D+SGPGIGY VTV+VCQIVFGIGAS+IVAWFSRHREFRADAG+A+LLG PQPM
Sbjct: 181 SALRRNSDDSGPGIGYTVTVLVCQIVFGIGASLIVAWFSRHREFRADAGAARLLGTPQPM 240

Query: 241 INALARLGGIPASGLPQSMAAMGISDKPGFMELFSTHPPMEQRIAALRGQR 291
           INALARLGG    GLPQ++AA+GISDKPG MELFSTHPP+EQRIAALRGQR
Sbjct: 241 INALARLGGFSPEGLPQNLAALGISDKPGVMELFSTHPPLEQRIAALRGQR 291


>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/292 (68%), Positives = 243/292 (83%), Gaps = 1/292 (0%)

Query: 1   MKRIFLFLATNIAVLVVMSVILSLLGVDKFLTRAGLNLPMLLVFSIVVGFTGSIISLLMS 60
           MKR+ LFL TN+AV++V+SV  SLLGV+++LT  GLN  MLLVF  ++GF GS ISL MS
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KTMAKWSTGARVIDTPVNSTEVWLVNTVSKLAQRAGIGMPEVAVYEGEPNAFATGAFKDS 120
           KT+AKWSTGARVI+ P NSTE+WL+ TV  LA RA + MPEVAVY+G PNAFATGA K +
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 ALVAVSTGLLQGMTKEEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVD 180
           +LVAVSTGLLQGMTK+EVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VGYFVD
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180

Query: 181 AALRRGN-DNSGPGIGYMVTVMVCQIVFGIGASMIVAWFSRHREFRADAGSAKLLGGPQP 239
           + LRR N +NSGPGIGYMVTV VC+I+FGI AS+IV +FSR RE+RADAG+A L+G   P
Sbjct: 181 SFLRRNNEENSGPGIGYMVTVFVCEIIFGILASIIVMYFSRQREYRADAGAASLMGSNAP 240

Query: 240 MINALARLGGIPASGLPQSMAAMGISDKPGFMELFSTHPPMEQRIAALRGQR 291
           MINAL RLGG+ + GLPQ++ A GIS +  +M LFS+HP +E RIAAL+ +R
Sbjct: 241 MINALRRLGGMQSDGLPQNLQAAGISGRESWMGLFSSHPSLESRIAALQSRR 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 875,812
Number of extensions: 37235
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)