BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0061.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312578|ref|YP_003776670.1| PHP family metal-dependent phos...   295   2e-81

>gi|300312578|ref|YP_003776670.1| PHP family metal-dependent
           phosphoesterase [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  295 bits (756), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 169/217 (77%), Gaps = 19/217 (8%)

Query: 2   LNVDLHCHSNVSDGLLPPGDVAARAKANGVDVWALTDHDEISGIAVARKAAQELGLRYIA 61
           L  DLHCHSNVSDGLLPP  VAARAKANGV VWALTDHDEI G+A AR AAQ LG+ ++ 
Sbjct: 6   LKFDLHCHSNVSDGLLPPEQVAARAKANGVGVWALTDHDEIDGVARARAAAQALGMVHVG 65

Query: 62  GVEISVTWAGQTVHIVGLRIDETNAALVQGLAATRNGRERRARARAR------------- 108
           GVEISVTWAG TVHIVGL+IDETN ALVQGLAATRNGRERRAR  A              
Sbjct: 66  GVEISVTWAGHTVHIVGLQIDETNPALVQGLAATRNGRERRAREIAAQLEQHGVAGAYEG 125

Query: 109 ------GXDLMSRTHFARYIVETGRCADTKEVFRNYLCEGKPGYVPHRWASLKESVEWIR 162
                   DL+SRTHFAR++VE GRC DT+EVF NYL EGKPGYVPHRWA+L+E+V WIR
Sbjct: 126 ALKHVGNPDLISRTHFARFMVECGRCCDTREVFANYLTEGKPGYVPHRWATLEEAVRWIR 185

Query: 163 GAGGVAVIAHPGRYQYSELEFGALFDEFKQHGGGSFS 199
           GAGGVAVIAHPGRY+YSE +FGA FDEF+Q GG +  
Sbjct: 186 GAGGVAVIAHPGRYKYSETQFGAFFDEFRQLGGAAIE 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 744,122
Number of extensions: 27192
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)