BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0056.p
         (418 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyropho...   765   0.0  
gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph...    64   2e-11

>gi|300312583|ref|YP_003776675.1| glutamine
           phosphoribosylpyrophosphate amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/396 (91%), Positives = 386/396 (97%)

Query: 1   MCGIVGVVSHSPVNQLLYDALLLLQHRGQDAAGIATNHANGFSMHKANGLVRDVFRTRNM 60
           MCGIVG+VSHSPVNQ+LYDALLLLQHRGQDAAGIATNH+NGFSMHKANGLVRDVFRTRNM
Sbjct: 1   MCGIVGIVSHSPVNQMLYDALLLLQHRGQDAAGIATNHSNGFSMHKANGLVRDVFRTRNM 60

Query: 61  RSLPGNTGLGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKVEMFKNDR 120
           RSLPGNTG+GQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLK+EMFKNDR
Sbjct: 61  RSLPGNTGIGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKIEMFKNDR 120

Query: 121 RHLNTDSDTEVLVNVFAHELQQATTGYSLDPAAVFKAVAMVHKRVRGSYAVVAQIAGYGL 180
           RH+NTDSDTEVL+NV AHE+QQATTGYSLDPAA+FKAVAMVHKRVRGSYAVVAQIAGYGL
Sbjct: 121 RHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSYAVVAQIAGYGL 180

Query: 181 LGFRDPYGIRPMCLGFNETDKGSEYMLASESVALEGLGFRFLRDVMPGEAIFIDNDGKLY 240
           LGFRDPYGIRPMCLGFNE+DKG EYM+ASESVALEG+GFRFLRDV PGEAIFIDNDGKLY
Sbjct: 181 LGFRDPYGIRPMCLGFNESDKGVEYMMASESVALEGMGFRFLRDVNPGEAIFIDNDGKLY 240

Query: 241 NQQCADNPTLNPCAFEFVYLARPDSVIDGASVYASRLKMGEYLAEKVRREIASGEIDVVM 300
           NQQCA+NP+LNPCAFE+VYLARPDS+IDGASVYA+RLKMGE+LA+K+R +   GEIDVVM
Sbjct: 241 NQQCAENPSLNPCAFEYVYLARPDSIIDGASVYATRLKMGEFLADKIRSQFKHGEIDVVM 300

Query: 301 PIPDSSRPAAMELALKLNLDYREGFIKNRYIGRTFIMPGQGLRKKSVRQKLNAIGSEFKG 360
           PIPDSSRPAAMELALKL ++YREGFIKNRYIGRTFIMPGQ LRKKSVRQKLNAIGSEFKG
Sbjct: 301 PIPDSSRPAAMELALKLGIEYREGFIKNRYIGRTFIMPGQALRKKSVRQKLNAIGSEFKG 360

Query: 361 KSVLLVDDSIVRGTTSREIVQMAREAGAKRVIFASA 396
           K+VLLVDDSIVRGTTSREIVQMARE+GAK VIFASA
Sbjct: 361 KNVLLVDDSIVRGTTSREIVQMARESGAKNVIFASA 396


>gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 605

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 31/222 (13%)

Query: 1   MCGIVGVVSHSPVNQLLYDALLLLQHRGQDAAGIATNHANGFSMHKANGLVRDVFRTRNM 60
           MCGIVG V+   V  +L + L  L++RG D+ G+A +        ++   V ++ +    
Sbjct: 1   MCGIVGAVAQQNVTPILLEGLKRLEYRGYDSCGVALHVDGKLQRSRSTSRVAELQQQIAQ 60

Query: 61  RSLPGNTGLGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKVEMFKNDR 120
             L G TG+   R+ T G+ ++   A P +      I L HNG + N ++L+ E+ +   
Sbjct: 61  SGLSGFTGIAHTRWATHGAPAT-HNAHPHFSRDR--IALVHNGIIENHDELRAEL-QAVG 116

Query: 121 RHLNTDSDTEVLVNVFAHELQQATTGYSLDPAAVFKAVAMVHKRVRGSYAVVAQIAGYGL 180
               + +DTEV+ ++  H        Y  D   +F  V    +R+ G+YA+    A    
Sbjct: 117 YVFESQTDTEVIAHLVDHM-------YDGD---LFNTVQQAVRRLTGAYAIAVFCAD--- 163

Query: 181 LGFRDPYGI------RPMCLGFNETDKGSEYMLASESVALEG 216
               +P+ +       P+ +G  E     +  +AS+++AL G
Sbjct: 164 ----EPHRVVAARQGSPLIVGVGE----GQNFVASDAMALAG 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,254,605
Number of extensions: 51969
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,203,190
Effective search space: 397052700
Effective search space used: 397052700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)