BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0055.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312584|ref|YP_003776676.1| colicin V production transmembr...   225   1e-60

>gi|300312584|ref|YP_003776676.1| colicin V production transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  225 bits (573), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/162 (68%), Positives = 135/162 (83%)

Query: 1   VTIFDYLVLLVLACSVVISMLRGLVREVLSLASWIIALVVANAYGEALAQMLPDVIPGES 60
           +TIFDYLVLL+L CSV+I  LRGLVREVLSLA W++ALVVA+ YGEALA MLP+++PGE 
Sbjct: 1   MTIFDYLVLLILGCSVIIGTLRGLVREVLSLAGWVVALVVADTYGEALATMLPEMVPGEL 60

Query: 61  TRLIVGFIVLFIGTRLLMGLVTRAMSEVVKASGLSLIDRSLGAVFGLARGAVIVLAVVLL 120
           TRLIV FI LFIGTRLL+ LV R +SE+VKA+GL+L+DR+LG+ FG+ARG ++V+   LL
Sbjct: 61  TRLIVAFIALFIGTRLLVALVARTLSELVKATGLTLLDRTLGSFFGVARGVLLVVVAALL 120

Query: 121 CGTTSIPQQPFWKEARFSALAETAAETAKPYLPGQFAQHVHF 162
           CGTT+IPQQ FWKEARFS   E AAE   PYLPG+ A+HV F
Sbjct: 121 CGTTAIPQQAFWKEARFSPWVEQAAEAVLPYLPGKLAEHVSF 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 460,442
Number of extensions: 16743
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)