BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0054.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum ser...   233   1e-62

>gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  233 bits (594), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/284 (56%), Positives = 190/284 (66%), Gaps = 27/284 (9%)

Query: 24  FCPKRRRGGVXARRRLIGAVALVLAVVIVLPMILDSEPRPLADDIAIQIPSKD---GKDA 80
             P+++R    ARRRLIGAVAL LAVVIVLPMILDSEP+PL DDIAIQIPSKD      A
Sbjct: 63  LLPEKKR----ARRRLIGAVALALAVVIVLPMILDSEPKPLNDDIAIQIPSKDQPASGAA 118

Query: 81  APAADKPKVAAAEPKEEFVDPATMNAGVEKPAIAPGASAMPSGPANAPQAQTAKPASSTP 140
            PAA   K A+ + KEE V+PA++             +   + PA  P A  A      P
Sbjct: 119 QPAAGDAKQASLDQKEEIVEPASIAPEPATTPAPAATAPAATQPATPPVAAVA------P 172

Query: 141 AVAEKPAEKPAAKPEIKAEVKADVKDSKTAAKP--AEHKDDHKKDVKEAAKPKAADKS-- 196
            V EKP EKPA KP  K   K + K      KP   EH+++ KK   EAAKPKA+  S  
Sbjct: 173 KVIEKPVEKPAEKPADKPTPKIEEK------KPIVVEHREEPKK---EAAKPKASAPSAH 223

Query: 197 DDAARALAILEGKPAAADKKSAPTPA-AGGKFVIQVAALATQEKIDELRGKLNGAGIKSY 255
           DD+ARALAILEGK  AA   +   PA +GGKFVIQVAALATQ+K++ELR KL+ AGI SY
Sbjct: 224 DDSARALAILEGKSGAAAAPAEKKPAASGGKFVIQVAALATQDKVNELRNKLSAAGIHSY 283

Query: 256 TQKVATQSGDRTRIRVGPFASRDEADKMRAKINKLGLNATVVPA 299
           TQK+ATQ+GDRTRIRVGPF SR+EA++M  +I KLGLNAT+VPA
Sbjct: 284 TQKIATQAGDRTRIRVGPFGSREEAERMGGRIKKLGLNATIVPA 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.126    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 556,505
Number of extensions: 15243
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 130 (54.7 bits)