BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0050.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312588|ref|YP_003776680.1| tryptophan synthase subunit alp...   435   e-123

>gi|300312588|ref|YP_003776680.1| tryptophan synthase subunit alpha
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  435 bits (1118), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/265 (81%), Positives = 233/265 (87%), Gaps = 7/265 (2%)

Query: 30  MSRIQSTFSALAAAPPPPX-------DPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82
           MSRIQ+TFS LA              DPAP+LTVPLLHALVAGGVDILELGVPFSDPMAE
Sbjct: 1   MSRIQTTFSQLAEQKRKALITFITAGDPAPELTVPLLHALVAGGVDILELGVPFSDPMAE 60

Query: 83  GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142
           GPVIQRACERALKF +STHDVL YVREFR+TNT TP+VLMGYANPIERFGVDAFIAAA E
Sbjct: 61  GPVIQRACERALKFGISTHDVLGYVREFRKTNTHTPIVLMGYANPIERFGVDAFIAAASE 120

Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202
           AGVDGTIVVDYPPEECEEF+QKMQA+G+DPIFLLAPTS++ERI QVA VSSGFCYYVSLK
Sbjct: 121 AGVDGTIVVDYPPEECEEFAQKMQAKGMDPIFLLAPTSSQERIRQVAAVSSGFCYYVSLK 180

Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262
           GVTGA +ID  EVA RIAAIR+HVKLPI VGFGIRDGATA+ V  VADAVVIGSRII EL
Sbjct: 181 GVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRIIAEL 240

Query: 263 ENTPRERAVEAVQAFVADIRKALDA 287
           ENTP+++A +AVQAFV DIR+ALDA
Sbjct: 241 ENTPQDQACDAVQAFVTDIRQALDA 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 741,349
Number of extensions: 27092
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)