BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0045.p
         (888 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembl...   509   e-145

>gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembly
           FimV protein [Herbaspirillum seropedicae SmR1]
          Length = 896

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 378/723 (52%), Positives = 450/723 (62%), Gaps = 84/723 (11%)

Query: 196 SDDEPVSSIVTKSAPSPLAEEIIRNGRSSEQGGLTNAPVPAAVAARTVPQPAAAKSEETA 255
           S +EP S+IV + APS LAEE+IR  +++      +A   AA  A  V       +   A
Sbjct: 226 SSEEPASNIVQRPAPSALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPA 285

Query: 256 PAATGKRGKGAAANAAAKPEGKAGDKTYRVKEGDTLADIANRTKDNTVSLDQMLIALYRA 315
                                K GD  YRVK GDTLA IA R +   VSLDQMLIALYRA
Sbjct: 286 G--------------------KTGD--YRVKPGDTLAGIAARNQQANVSLDQMLIALYRA 323

Query: 316 NPDAFIGDNINRLRAGRVLSVPDAAAAGAVDKGEARSTVVAQAQDFNAYRNKLAGQVASG 375
           NPDAF+G+NINRLRAG++LS+PD   A AVD+ EAR  VVAQAQDFNAYRNKLAGQVAS 
Sbjct: 324 NPDAFMGNNINRLRAGKILSIPDQPTAAAVDQTEARGMVVAQAQDFNAYRNKLAGQVASA 383

Query: 376 PARKANDARQSGGGKVTARVEEKSSTNEARDRLQLSKAGAGAKDRAAAEKAAAEDKIAAD 435
           PA K   +RQSGGGK+T RVEE+S   EARDRL+LS+A  G      A  AAAEDK AA+
Sbjct: 384 PAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSRANKGRGKTGNAGAAAAEDKAAAE 443

Query: 436 KAIAEANDRVKALEKNVSDLQKLLEIKNKTLAEMSEQQK-AAAKPETPAAAPAAAEVKPE 494
           +A+AEANDRVK LEKNV +LQKLLE+KNKT+A++S QQK A  +    AA  A AEVKP 
Sbjct: 444 RALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQQKEAKPESPAAAAPAANAEVKPA 503

Query: 495 EKPVEAKPAEATPAPAPEPAKPEATPAPAAAPAEAKPKVAVVPGPVATASFFDRIQDNPF 554
           E    A  A A  APAP PA   A   P AA    K          +  SF D+I++NP+
Sbjct: 504 EGATPAADAPAAAAPAPAPAPAPAATPPMAAKPAEK----------SGGSFVDKIKENPY 553

Query: 555 VLPGAGTLVALLA-AWGVVRVRNNKKKAAAAAAGDPEQEDEPAASPKETPPAVEAAAVAA 613
           VL GAG LVALLA   GV+ +R  KKK  AAAA    + +  +    E   A  AA    
Sbjct: 554 VLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVPEPEPVAAAVAAEPEP 613

Query: 614 AAVAAEAEKPAPEPVAVVEEPAATPVAEAPEVEAVDPIEEADMYISFGREEQAEDILQLA 673
              A  A +   EPVAV E    T   EAP    VDPI EADMYI++GR+EQAEDIL+LA
Sbjct: 614 PVSAEPAVEAVAEPVAVAE----TVAEEAP----VDPITEADMYIAYGRDEQAEDILKLA 665

Query: 674 LKSDPNRQAIRNKLLEIYAKRQDVDAFNDVAKELHAGTGGIGEEWEKAAALGIVLDPTNP 733
           L++ P RQA+  KLLEIYAKR DV AFN VA  LHA +GG+ E W KAAALG+ +DPTNP
Sbjct: 666 LQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGLEIDPTNP 725

Query: 734 LYGAVIEEEEIAPAEEPAPAEPEPDQGLEFDLDDFKGAEIQPGATP---PTDIGSKIDFD 790
           LYG   E E     EE          G+EFDLDDFK AEI+  ATP   P D+G  IDFD
Sbjct: 726 LYGGQPEPEPEPEPEEA---------GMEFDLDDFKSAEIRADATPAPAPMDLGKDIDFD 776

Query: 791 LELDSGAKPAEEDAQKPAAPA----------LNDIDLDLP------------PPET---P 825
           L+L++GAKP   DA +P  PA          L+ +D D P            P E    P
Sbjct: 777 LDLENGAKP---DADEPLLPASTAAASASTLLDSLD-DQPQASSLSDLDLSLPDEASAPP 832

Query: 826 KPVDVL-EDDESAFTAEMSTKLDLAAAYQEIGDKEGARELLEEVIRGGNDAQISRARDML 884
              ++L ED+ESAF AEM+TKLDLAAAY+EIGDKEGARELLEEV+RGGNDAQ++RA+ M+
Sbjct: 833 SATNLLEEDEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMM 892

Query: 885 SKL 887
           + L
Sbjct: 893 AGL 895


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,885,418
Number of extensions: 67305
Number of successful extensions: 325
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 1
Length of query: 888
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 794
Effective length of database: 1,174,780
Effective search space: 932775320
Effective search space used: 932775320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 135 (56.6 bits)