BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0042.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312595|ref|YP_003776687.1| 3-isopropylmalate dehydratase s...   410   e-116

>gi|300312595|ref|YP_003776687.1| 3-isopropylmalate dehydratase
           small subunit [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 187/215 (86%), Positives = 207/215 (96%)

Query: 12  MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71
           MNKFIVH+GLVAPLDRANVDTDAIIPKQFLKSI+RSGFGPNLFDEWRYLDHGEPGMDNSK
Sbjct: 1   MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60

Query: 72  RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131
           RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWALDQ+GFRAVIAPSFADIFFNNC
Sbjct: 61  RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120

Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191
           +KNGLLPIVL EQQ+D LF+EVKAFPG+RL+IDLEKQ+++T NGSQTYPFE+ EFRKYCL
Sbjct: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 180

Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226
           LNG DDIGLTLR+AD IRA+EE+HL +QPWL+NTI
Sbjct: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,009
Number of extensions: 31362
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)