BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0039.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...   401   e-113
gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...    77   1e-15
gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...    61   1e-10

>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score =  401 bits (1031), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 184/251 (73%), Positives = 219/251 (87%)

Query: 30  CESVQTTQGGAVGVTRTQSMALSAQEIDSAAVKEYAQVLDEQRKKGALNQNAAQVRRVRA 89
           CE+VQTTQGGAVG+ R Q M +S+ E+D+A+ KEYAQVL E + KG LN+NAAQV+RVR 
Sbjct: 22  CETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVLAEAKSKGLLNRNAAQVQRVRN 81

Query: 90  IADRLIPQTVAFRPDAAKWKWEVNVITSPEANAWCMPGGKIAVYTGLIEKLKITDDELAA 149
           IA RLIPQT  FRPDA KW WEVNV++S E NAWCMPGGKIAVYTGLIEKLKI+DDELAA
Sbjct: 82  IASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGGKIAVYTGLIEKLKISDDELAA 141

Query: 150 VMGHEISHALREHARERASEQAVTGSLISIGSSLLGVGELGQQGAQYAYMGLIGLPNSRT 209
           VMGHEI+HALREHARERAS+Q V  S ISIG++LLG+G++G+QG QY YMGL+GLPNSR 
Sbjct: 142 VMGHEIAHALREHARERASQQVVANSAISIGAALLGLGDVGKQGGQYLYMGLMGLPNSRA 201

Query: 210 HETEADRMGVELAARAGYDPRAAISLWQKMGQIGGSEPMKFMSTHPSRDDRISDLTVYSQ 269
           +ETEADR+GVELAAR GYDP+AA++LWQKM  +GG EPMKFMSTHPS  +RI+DLTVY+Q
Sbjct: 202 NETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEEPMKFMSTHPSSSERIADLTVYAQ 261

Query: 270 RVMPLYEQSKK 280
           RV PLY+Q+++
Sbjct: 262 RVEPLYQQTRR 272


>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 23/186 (12%)

Query: 106 AKWKWEVNVITSPEANAWCMPGGKIAVYTGLIEKLKITDDELAAVMGHEISHALREHARE 165
           A + ++  ++  P  NA+ +PGG I V +GL+   + ++ ELA VM HEI H  + H   
Sbjct: 143 AGFDFQFFMVRDPMLNAFALPGGFIGVNSGLVLAAQ-SESELAGVMSHEIGHVAQRHI-A 200

Query: 166 RASEQAVTGSLISIGS----SLLGVGELGQQGAQYAYMGLIGLP------NSRTHETEAD 215
           R   Q    S+I + +    +L GV + G   A    MG  GL        SR  E EAD
Sbjct: 201 RMLGQQKQNSMIQLAAIVLGALAGVSKAGGDAAMATMMGGTGLAVQRQLNFSRDAEREAD 260

Query: 216 RMGVELAARAGYDPRAAISLWQKMG----QIGGSEPMKFMSTHPSRDDRISDLTV----- 266
           R+G+++    G+DP   ++ + ++         + P  ++ THP   +RI+D+       
Sbjct: 261 RIGLQIMRDGGFDPSGMVTFFGRLQAASRNYSDAVP-PYLMTHPLTTERIADIEARIRDQ 319

Query: 267 -YSQRV 271
            Y QRV
Sbjct: 320 RYKQRV 325


>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 85  RRVRAIADRLIPQTVAFRPDAAKWKWEVNVITSPEANAWCMPGGKIAVYTGLIEKLKITD 144
           RR +AI  R    T    PDA  ++  V   +    NA+ +P G+I V T  I +L   D
Sbjct: 154 RRTQAITARFRALTAPL-PDAPDYQI-VFRKSRIGPNAFALPSGQIVV-TDEIVRLLDDD 210

Query: 145 DELAAVMGHEISHALREHARERASEQAVTGSLISIGSSLLGVGELGQQGAQYAYMG--LI 202
           D L  V+ HE+ H  R H   R     +  S I+  +++L     G   A  A +   L+
Sbjct: 211 DALMGVLAHELGHVHRRHLMRR----LIQSSAIAATATVL----FGDVSAVLANIPTVLL 262

Query: 203 GLPNSRTHETEADRMGVELAARAGYDPRAAISL-WQKMGQIGGSEPMK-FMSTHPSRDDR 260
            L  SR  E EAD   + +    G  PR  ++L ++K+   G  +P   ++S+HP+ D+R
Sbjct: 263 DLKYSRDIEREADDYAIAMFKANGL-PRQKLALVFEKLESAGKDDPASPYLSSHPANDER 321

Query: 261 ISDL 264
           I+ +
Sbjct: 322 IAHI 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,056
Number of extensions: 27699
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 3
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)