BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0033.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...   592   e-170

>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  592 bits (1526), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 355/419 (84%), Gaps = 2/419 (0%)

Query: 1   MQGLSRTQLRDLFRFAAKRLSDDRLPQVAGSLTFTTILSLVPLLTIALAIFTAFPLFSTF 60
           M+GL+R QL DL RFA +RL +DRLPQVAGSLTFTTILSLVP+LTIALA+FTAFPLFSTF
Sbjct: 11  MRGLTREQLSDLLRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTF 70

Query: 61  RSALEAYFVQSLMPKGVASTILGYLNQFSSKSARLSAVGGVALILTSVLTMATIDRVFNQ 120
           R++LEAYFV++LMPKGVA+TILGYLNQF++KSAR+SAVGGV LILTSVLTM+TI+ VFNQ
Sbjct: 71  RASLEAYFVENLMPKGVANTILGYLNQFAAKSARISAVGGVVLILTSVLTMSTIESVFNQ 130

Query: 121 IWRVKKSRPLLQRILVYWAIITLGPLLIGISISVTSYLYSATNGVVTSVPLIGASFYTLI 180
           IWRVKKSRPL+QR+LVYWAIITLGPLLIG+SISVTSYL +AT G V S+P +GASFYTL+
Sbjct: 131 IWRVKKSRPLVQRVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFYTLV 190

Query: 181 SVLLTTSAFTLLYIAVPNQWVDWRDAVWGGLLAGVGVEIAKRLFASYVMKFPTYTMVYGT 240
           S++ +T A+TLLY  VPNQ VDWRDA+ GGLLAG+G+EIAKRLFA Y++KFPTYTMVYGT
Sbjct: 191 SLMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILKFPTYTMVYGT 250

Query: 241 VAALPIFLLWIYMLWMITLVGALVTAALPIVRYERWWHVASPGSEFIDAMKVLKILHEAR 300
           VA LPIFL+WIYM+WMITL GAL+TAALP+VRYERWWHVASPG+EFIDA+KVL+ LH AR
Sbjct: 251 VAVLPIFLVWIYMMWMITLFGALLTAALPVVRYERWWHVASPGAEFIDAIKVLRFLHAAR 310

Query: 301 ANGESAKVDAGLLRTRTQLGLEELQTLLQKMLEAGWVGSLKGDAPRRSAWNKRLADGLDR 360
              ESA V    +R  T+LGL ELQ LL +M E GWV S+K    RRS+WN+R+ D +DR
Sbjct: 311 VGVESAVVSMDEVRRATRLGLGELQQLLARMSEEGWVASVKPGNSRRSSWNRRITDDMDR 370

Query: 361 WTLLINPESLKLVDVYRLFVFDSAT--HAGEDQQLVNRVESAVSLVLDQTLASYFSEGA 417
           WTL+ NP +++L  VYRLFVFD A    AGE++ LV+RVE A+  VL Q+L  Y S  A
Sbjct: 371 WTLVANPSTIQLARVYRLFVFDPAVLAQAGEEEGLVHRVEGAIDAVLAQSLEDYCSADA 429


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,273,554
Number of extensions: 47908
Number of successful extensions: 249
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 132 (55.5 bits)