BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0024.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312607|ref|YP_003776699.1| phospholipase A1 protein [Herba...   519   e-148

>gi|300312607|ref|YP_003776699.1| phospholipase A1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  519 bits (1337), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/419 (61%), Positives = 325/419 (77%), Gaps = 14/419 (3%)

Query: 28  LAALGALSLMQG--ASAGISLLQPPKLVDGNKPFTLTLLVAEDERDSQAYAIPDNLVVAA 85
           L ALG  SL+ G  A AGI+L+QPPK +D +KP  LTLLV+E+++  + Y +P  L+VAA
Sbjct: 22  LCALGG-SLLIGMPAHAGITLVQPPKRIDVSKPLELTLLVSEEDQPERTYTLPSTLLVAA 80

Query: 86  SADMTPPVQLRMEREAGAPGEITLKRGEFRKITYSATLPDYLRGVVRLETVGVDASPVLV 145
           SADM PP Q+ ++R   + G ITL++G+FRK+ Y   LP+ LRG+VR+E +G+DA+PVLV
Sbjct: 81  SADMIPPQQISLQR-VDSEGSITLRQGQFRKLRYRGMLPERLRGMVRIEPIGMDAAPVLV 139

Query: 146 AVIRPKD--GKMP-------VPSAEGIALAGAATPSASVITPGANASPIGIAPAALDLI- 195
           AV+RP    G +P        P A+  +      PSA+V TPGA+ASP+  APAA D++ 
Sbjct: 140 AVVRPDAALGALPESPDLINTPLADSSSTVAPVAPSATVFTPGADASPLDSAPAAEDILS 199

Query: 196 DIPRLSFHEPMYFAAGNSGGNRNARFQLSFKFRIFQPEDMRSRGLIDNLYFGYTQYSLWD 255
           +  RLSF+EPMYF+ GNSGG+ NARFQLS KFR+F P+D RSRG +DNLY GYTQ+SLWD
Sbjct: 200 NNRRLSFNEPMYFSVGNSGGDTNARFQLSLKFRLFVPDDPRSRGPLDNLYLGYTQFSLWD 259

Query: 256 LESPSAPFRDTSYRPSLFYYLPDLGIHNSILSRMAISTGLEHESNGRDGAQSRGINTFFV 315
           L +PSAPFRDTSYRPSLFYYLPD+GI N +LSR+ I+TGLEHESNGRDGAQSR INT+F+
Sbjct: 260 LSAPSAPFRDTSYRPSLFYYLPDVGIQNRVLSRIGIATGLEHESNGRDGAQSRSINTYFI 319

Query: 316 EPTFTVGNLNDYQLRISPKVYAYLGPTSDNPDIGQYRGHADLKLAVGKPDGVEFSTTLRK 375
           EP+F  GNLNDY  +++PKVYAYLGPT DNPDIG YRGH DLKL+ GKPDG+E +T LRK
Sbjct: 320 EPSFNFGNLNDYHFKVAPKVYAYLGPTRDNPDIGDYRGHMDLKLSYGKPDGLEVATMLRK 379

Query: 376 GTRNSSGSADSTLSYPLAKLVPGMAGYLMASYFYGYGESLLTYNQKSTPQFRIGYALSR 434
           G    + ++ + +SYPL++L+PG AGYLMASYF+GYGESLLTYNQK   QFRIGYAL R
Sbjct: 380 GRLGGTLTSQTQVSYPLSRLLPGTAGYLMASYFHGYGESLLTYNQKDRAQFRIGYALWR 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,475,836
Number of extensions: 67211
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)