BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0020.p
         (540 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [...   707   0.0  

>gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/537 (77%), Positives = 463/537 (86%), Gaps = 5/537 (0%)

Query: 1   MYLIGLIAFLISLPILGIAGAWLQLDAAAIDALHQQMQTVLPGYLATSAWLALFVTLGVI 60
           M+ IGL+A LI+LPILGI  AW  LDA  +DAL QQ +TVLPGYLATS WLAL VTLGV+
Sbjct: 1   MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60

Query: 61  VVGAATAVTIGLFEFRGKRFFAWALLLPMAMPAYVCAYAYTDFLQYGGAVQSSLRALWPG 120
           VVG ATAVT+ LFEFRG+R+F+WALLLPMAMPAYV AYAYTDFLQY G VQS+LR  +PG
Sbjct: 61  VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120

Query: 121 FRVDVRSLAGAIFLFIFTLYPYAYLLARNALGERGVHLMEAARLLGTPLSARIRRVALPL 180
           FR++VR L GAI +F+ TLYPYAYLLARNAL ERG HLMEAAR+LG PLS RI RVALPL
Sbjct: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180

Query: 181 ARPALMAGAALALMETLADYGVSAYFGLTTFTTGIYKAWMVMDDRIAAAQYATLLLLFVA 240
           ARPAL AGAALALMETLADYGVSAYFGLTTFTTGIYKAW+V+DDR+AAAQYA+LLLLFV 
Sbjct: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240

Query: 241 MLLWLERREQGRMRFATVRGNRGLGGNDGDGAEARLPVLRGAREALAWLVCATPVLLGFV 300
           +LLWLERREQGRMRFA  RG RG      DGAEARLPVL  A+ ALAWLVC  PV+LGFV
Sbjct: 241 VLLWLERREQGRMRFAATRGGRG-----HDGAEARLPVLSRAQTALAWLVCGLPVVLGFV 295

Query: 301 LPVLILLQLMWRESELSMATNLARYAGWTWNSFRFGGVAAALAVGLALALGFAQRAGGLP 360
           LPV ILL+L W E+   M  ++ RYAGW WNSFRFGG+AA  A+ LALAL FA R+GGLP
Sbjct: 296 LPVAILLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSGGLP 355

Query: 361 RFKSAFLRLVARLASMGYAIPGSVIAVGILLPVAWLQAMFPGSGAGVWLTATALGVIYAY 420
           R ++A LRL ARLA MGYAIPGSVIAVGILLPVAWLQ+++PG+G GV LTA++LGVIYAY
Sbjct: 356 RLQAALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVIYAY 415

Query: 421 LVRFTAVAVQSVEAGYTRIPLSLDEAARTMGASRSRIVLKLHMPLLWRSLTTGALMVFVD 480
           LVRFTAVAVQSVE+GYTRIP SLDEAAR++G+SR+ I  ++HMPLLWRSL   ALMVFVD
Sbjct: 416 LVRFTAVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMVFVD 475

Query: 481 VVKELPATLLLRPFNTDTLAVIAHNLARDERLGEAALPALSIVLVGLIPVMLVTRAL 537
           VVKELPATLLLRPF+TDTLAVIAHNLARDERLGEAALPALSIVLVGL PV+LV RAL
Sbjct: 476 VVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRAL 532


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,375,007
Number of extensions: 47689
Number of successful extensions: 353
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 5
Length of query: 540
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,193,720
Effective search space: 537174000
Effective search space used: 537174000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)