BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0017.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311217|ref|YP_003775309.1| Fe3+ ABC transporter periplasmi...   432   e-122

>gi|300311217|ref|YP_003775309.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/261 (77%), Positives = 226/261 (86%)

Query: 1   MFLRTFVAGMVLATTSIGVSAQEKVINLYSARHYQTDEALYGNFTKATGIKINRVDADDA 60
           MF R    G +LA  +    AQEKVINLYSARHYQTDEALY +FTK TGIKINR+D DDA
Sbjct: 1   MFPRHLAVGAMLAAIATSSFAQEKVINLYSARHYQTDEALYADFTKTTGIKINRIDGDDA 60

Query: 61  GILARLKSEGTASPADVILLVDAARLWRGENDGLFQPVKSGVLDSRIPANLRGKDEGQGS 120
           GILARLKSEG +SPADVILLVDAARLW+ ++DGLFQPVKS +LD RIPANL  K+   G+
Sbjct: 61  GILARLKSEGASSPADVILLVDAARLWKAQSDGLFQPVKSKLLDERIPANLHSKEGSDGT 120

Query: 121 QWFGFSTRARVIVYNKQNVKPEDVDTYESLADPRNKGKLCTRSGAHPYNVSLFGALYEHV 180
            WFGFSTRARVIVYNK +VKPEDVDTYE+L DP+NKGKLCTRSG+HPYNVSLFGAL EH 
Sbjct: 121 LWFGFSTRARVIVYNKASVKPEDVDTYEALGDPKNKGKLCTRSGSHPYNVSLFGALLEHD 180

Query: 181 GEARTETILKGMVANMARSPVGGDTDQIKAVASGECGVAISNSYYVARLMKSTKPEDIAV 240
           G A+TE+ILKGMVAN AR PVGGDTDQIKAV SGECGVAISNSYYVARLM+STKPED+A+
Sbjct: 181 GAAKTESILKGMVANQARQPVGGDTDQIKAVGSGECGVAISNSYYVARLMRSTKPEDVAL 240

Query: 241 VSKFGVVWPNQKTFGAHVNIA 261
           + K G+VWPNQK++GAHVNIA
Sbjct: 241 MEKVGIVWPNQKSYGAHVNIA 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,350
Number of extensions: 39860
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)