BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0012.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 249 2e-67 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 187 1e-48 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 185 4e-48 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 184 8e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 172 2e-44 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 249 bits (636), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 118/232 (50%), Positives = 166/232 (71%), Gaps = 1/232 (0%) Query: 25 QVSFGIDKGEFVCIIGHSGCGKTTILNVLAGLEAPSGGVVIMDQREVKGPSLDRGVVFQS 84 +++ + KGEFV +IGHSGCGK+T+LN++AGL PS GV++ RE+ GP+ +R VVFQ+ Sbjct: 32 EINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAVVFQN 91 Query: 85 HALMPWFSVLGNVVFAV-RSRWPDWSRDKAETHARRFIEMVGLKGAEHKKPSELSGGMKQ 143 H+L+PW S N+ V R +R + R + +VGL AE+K+P+E+SGGMKQ Sbjct: 92 HSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGGMKQ 151 Query: 144 RVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICSATHQTVFMITHDVDEAILL 203 RVGIARA ++EPK+LLMDEPFGALDALTR +QDELLKI + T TV M+THDVDEA+LL Sbjct: 152 RVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLL 211 Query: 204 ADKIFLMSNGPRARIAEVVVNTMPKTRTRETMHHDPQFYRIRNHLVDFLVHR 255 +D+I +M+NGP A I EV+ + + R R + DP++ + R +++FL + Sbjct: 212 SDRIVMMTNGPAATIGEVLEVKLARPRDRVVLAQDPEYGQYRTAVLEFLYRK 263 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/247 (42%), Positives = 149/247 (60%), Gaps = 10/247 (4%) Query: 6 LTVENLNKRYTDDGLPVFDQVSFGIDKGEFVCIIGHSGCGKTTILNVLAGLEAPSGGVVI 65 L+ N+ K + D L V ++ + I GE V ++G SGCGK+T+L++ AGLE PS G V Sbjct: 3 LSFNNVAKHFGD--LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 66 MDQREVKGPSLDRGVVFQSHALMPWFSVLGNVVFAVRSRWPDWSRDKAETHARRFIEMVG 125 D + ++GP +R ++FQ +AL PW ++ NV A+ + D + KA AR ++E V Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVD--KKKAAEQARVWLENVK 118 Query: 126 LKGAEHKKPSELSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICSA 185 LKG EH P ++SGGM+QR +ARAF +PK LL+DEPFGALDALTR +QD L + Sbjct: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQ 178 Query: 186 THQTVFMITHDVDEAILLADKIFLMSNGPRARIAEVVVNTMPKTRTRETMHHDPQFYRIR 245 TV ++THDVDEA+ LAD+IF+ S P + E + KT H +F IR Sbjct: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKT------HDLSEFAAIR 232 Query: 246 NHLVDFL 252 ++ L Sbjct: 233 RDILCLL 239 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 148/246 (60%), Gaps = 11/246 (4%) Query: 26 VSFGIDKGEFVCIIGHSGCGKTTILNVLAGLEAPSGGVVIMDQREVKGPSLDRGVVFQSH 85 ++ I G+FVC++G SGCGK+T+LN +AG PS G ++ D + V P DRG+VFQ + Sbjct: 32 INLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVFQEY 91 Query: 86 ALMPWFSVLGNVVFAVRSRWPDWSRDKAETHAR--RFIEMVGLKGAEHKKPSELSGGMKQ 143 AL PW +V NV F + + KAE H R + ++ +GL + P +LSGGM+Q Sbjct: 92 ALFPWMTVEQNVAFGLEIK----GTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Query: 144 RVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICSATHQTVFMITHDVDEAILL 203 RV IAR +++ ++LMDEPFGALDALTR +QDELL+I +T+ +TH ++EAI L Sbjct: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 Query: 204 ADKIFLMSNGPRARIAEVVVNTMPKTRTRETMHHDPQFYRIRNHLVDFLVHRSRRIQEAG 263 AD+I +M+ P +++VN +P+ R DP+F ++ L ++ +R A Sbjct: 208 ADRIVVMTYRPGTVKRDMLVN-LPRLRD----PADPEFNALKRELGQLVMEEQQRHHNAE 262 Query: 264 AEDAGT 269 + A Sbjct: 263 MKAAAV 268 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 184 bits (467), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 141/224 (62%), Gaps = 4/224 (1%) Query: 26 VSFGIDKGEFVCIIGHSGCGKTTILNVLAGLEAPSGGVVIMDQREVKGPSLDRGVVFQS- 84 + I GEFVC++G SGCGK+T+LN +AG + SG + + D + VKGP LDRGVVFQS Sbjct: 25 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSGEISV-DGKRVKGPGLDRGVVFQSS 83 Query: 85 HALMPWFSVLGNVVFAVRSRWPDWSRDKAETHARRFIEMVGLKGAEHKKPSELSGGMKQR 144 AL PW SV NV + ++ R + + A R++ +VGLK A K P+ELSGGM+QR Sbjct: 84 EALFPWLSVRENVEYGLKLR--GVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQR 141 Query: 145 VGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICSATHQTVFMITHDVDEAILLA 204 IAR EP ++LMDEPFGALDA TR V+Q EL +I +T T+ +THD+ EAILLA Sbjct: 142 AQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILLA 201 Query: 205 DKIFLMSNGPRARIAEVVVNTMPKTRTRETMHHDPQFYRIRNHL 248 D++ M+ GPRA I + +P R + RIR+ + Sbjct: 202 DRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDI 245 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 9/257 (3%) Query: 6 LTVENLNKRYT---DDGLPVFDQVSFGIDKGEFVCIIGHSGCGKTTILNVLAGLEAPSGG 62 L VEN + ++ + D+VS I G FV +G SGCGK+T+LN +AG S G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 63 VVIMDQREVKGPSLDRGVVFQSHALMPWFSVLGNVVFAVRSRWPDWSRDKAETHARRFIE 122 + +D + V GP +RGVVFQ +L+PW SV NV ++ + S+ + A+ + Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLK--FAGVSKSDSRERAQELLR 119 Query: 123 MVGLKGAEHKKPSELSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKI 182 +VGL+ P ELSGGM+QRVG+ARA + PK+LLMDEPFGALD++TR +Q+ L+ + Sbjct: 120 LVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSV 179 Query: 183 CSATHQTVFMITHDVDEAILLADKIFLMSNGPR---ARIAEVVVNTMPKTRTRETMHHDP 239 + T + VF ITH ++EA+ L ++ +MS P AR V + +P Sbjct: 180 WARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEP 239 Query: 240 QFYRIRNHLVDFLVHRS 256 F +R + +VH+S Sbjct: 240 AFAELREE-IRAIVHQS 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,922 Number of extensions: 38797 Number of successful extensions: 492 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 134 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)