BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0011.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 201 6e-53 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 88 1e-18 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 83 2e-17 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 83 3e-17 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 74 1e-14 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 201 bits (511), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 111/229 (48%), Positives = 155/229 (67%) Query: 63 VKTSGFPGLAQMGETMRRELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLG 122 +KTS FP + A+PFY N PND+GIG + SL RVG GF +AALV IPLG Sbjct: 76 LKTSSFPTPWVTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRVGTGFGLAALVGIPLG 135 Query: 123 FLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTA 182 F +G + R P I +L+P+SPLAW+P+ L K ++ + I+ IFICS+WPM++NTA Sbjct: 136 FAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTA 195 Query: 183 FGVASVRRDWLNVAKTLEVTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVG 242 GV V +D++NVA+ L ++ + ++ P+ P +LTG+R+S+G AWLVIVAAEML G Sbjct: 196 VGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTG 255 Query: 243 GTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVLDLFFARLQKLVTYTE 291 G GIG++VW+EWNNL++ +I AI+VIGV G+VL+ L K TY + Sbjct: 256 GVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQ 304 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 106/183 (57%) Query: 103 SLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSS 162 SL RV GF I A +A+PLG L+G S + +N +Q+++PI P+A++PLA+ + Sbjct: 80 SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGN 139 Query: 163 ISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVTPLRKAFLVILPAAAPTILTG 222 +F+I + + +P+LMNT GV V +L A+ L + V+LPAA P IL+G Sbjct: 140 PPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSG 199 Query: 223 MRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVLDLFFAR 282 +RI +G A++V++ AEM+ G+G+ + +I ++ IG+ G+ +DL +R Sbjct: 200 VRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSR 259 Query: 283 LQK 285 L Sbjct: 260 LNN 262 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 2/176 (1%) Query: 103 SLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSS 162 S R+ G+ ++ +PLG +G +++ L+P+I+ + I P+A++ LA+ + Sbjct: 67 SSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGE 126 Query: 163 ISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVTPLRKAFLVILPAAAPTILTG 222 +S I +IF +V+ + +NT GV +V L A +L + VILP+ P ++TG Sbjct: 127 LSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTG 186 Query: 223 MRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIF-AILVIGVTGMVLD 277 RI+MG ++L +V+AE++ G+G +W N S T +F I+ +G+ G + D Sbjct: 187 ARIAMGNSFLTVVSAEIVSAREGLGALIWTA-RNFSRTEWVFVGIIALGILGYLFD 241 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 80/152 (52%) Query: 99 QLGYSLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTI 158 + SLARV GF I + +A+ LG L+G+S + L P Q L+ I LAW+PL L + Sbjct: 75 HIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWL 134 Query: 159 KDSSISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVTPLRKAFLVILPAAAPT 218 + +I I + +P+ +N G+ + + V T + ++LPA+ P Sbjct: 135 GIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPY 194 Query: 219 ILTGMRISMGIAWLVIVAAEMLVGGTGIGYFV 250 + G+R + +AW+ +VAAE++ G+GY + Sbjct: 195 LFAGLRGGLSLAWMFLVAAELIAATKGVGYLL 226 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 111/205 (54%) Query: 81 ELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQ 140 ++A +++G + + +G SL R+ IA L+ IP+G L+G++ ++ L+ I+ Sbjct: 80 KVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIE 139 Query: 141 ILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLE 200 P+ PLA++PL + + S I ++ + P++++ GV S+ ++ +N A +L Sbjct: 140 FYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLG 199 Query: 201 VTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT 260 T + V+LP+A P ILTG+RI++G+ W +VAAE++ GIGY + + + L+ Sbjct: 200 ATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATD 259 Query: 261 SVIFAILVIGVTGMVLDLFFARLQK 285 +V I +I L++ Sbjct: 260 AVFVGIALIATCAFAFSYGMRLLER 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 956,689 Number of extensions: 41613 Number of successful extensions: 256 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 15 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)