BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0008.p (214 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312077|ref|YP_003776169.1| response regulator containing a... 187 7e-49 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 181 4e-47 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 127 8e-31 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 112 2e-26 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 97 9e-22 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 187 bits (474), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 98/211 (46%), Positives = 144/211 (68%), Gaps = 3/211 (1%) Query: 2 IRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQD 61 I++L+ DDH IVREGL+QI A + DI VA A+G E ++ AR D++LLDI +P ++ Sbjct: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 Query: 62 GLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAADG 121 G+D+L+Q+++E P LPVL+LS + E QYA R + GAAG+LNK A +L+AAIR+AA G Sbjct: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 Query: 122 GVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSPN 181 YVS +A+ LA ++ + HETLS REYQ +IA+G++V +IA +LTLS Sbjct: 129 RKYVSPSLAQELANQI---GFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVK 185 Query: 182 TVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 T+S YRSR+L K ++ + YA+++ L+ Sbjct: 186 TISMYRSRVLSKMKMRHNAELTHYALKNALV 216 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 181 bits (459), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 135/212 (63%), Gaps = 4/212 (1%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 M +IL+ DDH +VR G+ +++ +E+ E + E +R R + D+VLLDIA+P + Sbjct: 1 MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 G++VL+Q+K+E P LPVLMLS +PE +YA + R GA+GY+ K A +LV AI Sbjct: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 G Y+S +AE L +E +++ HETLS REY++F + G+ V +IAD+L LS Sbjct: 121 GHKYISYGVAELLTSE----PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSV 176 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 TVSTYRSR+L+K N+ I YA+++ L+ Sbjct: 177 KTVSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 127 bits (318), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 1/208 (0%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQ 60 + RI+L DDH +VR G+K +L +EV E +DG EV+ DLVLLDIA+ Sbjct: 2 LTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGM 61 Query: 61 DGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAAD 120 +GL+ LR+L+ E P + LMLS Y ++Y + GA GYL K + +L A+ + Sbjct: 62 NGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKH 121 Query: 121 GGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSP 180 G Y+ H++ A + + E L+ R+ ++ QLIA G + KEIA QL +S Sbjct: 122 GRQYLDSHISRE-ALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 Query: 181 NTVSTYRSRILEKTGAGNDVGIAMYAVR 208 T+ T+R++++E+ + G+ YA+R Sbjct: 181 KTIETHRAQLMERLDIRDVPGLVRYAIR 208 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 3/213 (1%) Query: 2 IRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQD 61 IRILL DDH + R G++ +L DI+V E DG + +++A D+VL+D+ +P Sbjct: 3 IRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLS 62 Query: 62 GLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAADG 121 GL+ ++ + Q++P VLMLS E GA GYL K+ + + LV +I++AA G Sbjct: 63 GLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAG 122 Query: 122 GVYVSLHMAETLAAELSAHSASTQRAAHE---TLSHREYQVFQLIAAGRSVKEIADQLTL 178 +S M L +L A + + +A E L+ RE IA G+S KEIA L + Sbjct: 123 EPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEV 182 Query: 179 SPNTVSTYRSRILEKTGAGNDVGIAMYAVRHQL 211 + +TV + +L K + V IA+YAV H L Sbjct: 183 AESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 97.1 bits (240), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 4 ILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAIDLVLLDIAIPLQDGL 63 I+L DDH +VR+GL+ L +EV AE E L A + IDL L+DI + +G+ Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 64 DVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKAADGGV 123 ++ P + VL+LS + + +Y + + GA GY+ K A ++ +V AI GG+ Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 124 YVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTLSPNTV 183 Y S +A L L E L+ RE +V IA G S K+IA +L LS TV Sbjct: 134 YYSAALARQLTQPLP---------PRELLTQREREVLMHIANGESNKQIARELDLSVRTV 184 Query: 184 STYRSRILEKTGAGNDVGIAMYAV 207 T+R I K + +AV Sbjct: 185 ETHRLNIKRKLNIDGQAELIKFAV 208 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 624,919 Number of extensions: 24017 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 23 Length of query: 214 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 133 Effective length of database: 1,236,335 Effective search space: 164432555 Effective search space used: 164432555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)