BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0007.p (430 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 149 5e-37 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 90 3e-19 gi|300312076|ref|YP_003776168.1| signal transduction histidine k... 83 4e-17 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 78 2e-15 gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 77 3e-15 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 170/315 (53%), Gaps = 16/315 (5%) Query: 87 LGKNMHELVHHSHEHGEHYPEEDCPILKAFRK----GESCRVDQEVFWRADGTCFATEYS 142 LGK E ++ S PEE I + R+ G+ +++Q + F T Sbjct: 352 LGKTWEETMYRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKV 411 Query: 143 SYQIIDGGRVRGAVITFSDISKRRLAEEQLQRAKAELEQRVAERTRELSAALMQVRELSA 202 + DG V+G + +DI++R+ AE++L++ +++LE+ V +RT L REL+ Sbjct: 412 PWFGKDGS-VQGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALL-------RELTN 463 Query: 203 HAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVADREPVARKCASMNRLIEAAV 262 H +VRE+E+ IARE+HD +G+ L AL + + + + E A + M L+++ V Sbjct: 464 HLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLV 523 Query: 263 DNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAPQG-TLATA 321 RI T+LRP+ LD GL AA+ Q+ E E T + C P G + A Sbjct: 524 ATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASL---PDEDVEVGHEMEIA 580 Query: 322 AFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKSYGVMGMR 381 +R+ QEML+NV +H++A++V +++ + D + + V D+GVG+P N K+YG+ G+R Sbjct: 581 IYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLR 640 Query: 382 ERALHFAGALNIENA 396 ERA F G ++I + Sbjct: 641 ERATFFGGEVDIRST 655 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 13/221 (5%) Query: 196 QVRELSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRV-ADREPVARKCASM 254 ++R+L+ +E+ER R++R++HD + LV++KL + R+ E A A Sbjct: 234 KLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAGF 293 Query: 255 NRL---IEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQA 311 + I + V RI DLRP+ILD GL AALE E+ +A ++ F+ QA Sbjct: 294 EKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFE--NQA 351 Query: 312 FAPQG-----TLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPA 366 A G + T FRI QE L+N+A+H+ A+++K+ + + L+++V+DNG G Sbjct: 352 QADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDL 411 Query: 367 AALANPKSYGV--MGMRERALHFAGALNIENAVDGAKEAGV 405 + + +G+ MRER G L I+++ G + V Sbjct: 412 GQVDDHSRHGIGLRNMRERIEAVGGELGIDSSPAGTSISAV 452 >gi|300312076|ref|YP_003776168.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 356 Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 10/204 (4%) Query: 202 AHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVADR---EPVARKCASMNRLI 258 A A +RE ER RIAR++HD+LG +L + + + + ++A + P+A + +L+ Sbjct: 145 ATAIHIREQERERIARDLHDDLGGVLAGVGMALGRLQEQLAAQGLAAPLA-EADEARQLL 203 Query: 259 EAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAPQGTL 318 + A+ ++ II +L P I++ GLV AL+WQ ++ L C + D P L Sbjct: 204 QQAMASMHSIIDELHPPIVEF-GLVDALQWQCRQIQREYRLHC--QLDCPPTLEQEDRFL 260 Query: 319 ATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVP---AAALANPKSY 375 RI +E SN A+H +A+ +++ +R+ L M++ D+G G+ A +A + Sbjct: 261 ILGLLRILREAASNAARHGRASALRVDLRMRQARLEMQIADDGCGIAPLHAKEVAPRHGH 320 Query: 376 GVMGMRERALHFAGALNIENAVDG 399 G+ MRERA G L IE DG Sbjct: 321 GLRNMRERAQALGGELFIEAGQDG 344 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 9/213 (4%) Query: 188 RELSAALMQVRELSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVADREPV 247 R+L A+ + + LS+ V+E ER +AR +HD++G L ALK+++ + + P Sbjct: 248 RDLELAIQRQQLLSSRVIEVQERERQHLARGLHDDVGQSLTALKINLETIKKMGSLEGPS 307 Query: 248 ARKCASMNRLIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDI 307 + ++ A + V + DLRP LD+ GL+AAL V++ S+ + + F+ Sbjct: 308 LQNGID---IVTAVLAQVRSLSLDLRPPQLDNLGLIAALRSYVEQKSKLANV--NGWFES 362 Query: 308 SPQAFAPQGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAA 367 S + AFRI QE ++N+ +H++ + + + D + + + D+G G Sbjct: 363 SGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWVKIDRQHDQVYLSIRDDGRGFDIE 422 Query: 368 -ALANP---KSYGVMGMRERALHFAGALNIENA 396 A +N S+G++ M ERA+ G++ I +A Sbjct: 423 RARSNAISGTSFGLLNMEERAVLVGGSMEITSA 455 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 35 LLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAAGAEMLGYRIEQ-MLGKNMHE 93 LLDST +G + ID G T AA ++LGY E+ +LG+ +H+ Sbjct: 446 LLDSTDQGFFSIDSAGIITLCN----------------AAFLQLLGYAAEKDVLGRPIHD 489 Query: 94 LVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADGTCFATEYSSYQIIDGGRVR 153 ++ E E C +L+A R+G S VD E F R DGT F +Y ++ + G+++ Sbjct: 490 VILQPSE--ETQSRTGCAVLRAAREGVSAHVDSENFLRVDGTSFPVQYQTHPVWQDGQLQ 547 Query: 154 GAVITFSDISKRR 166 GA+ TF D+++RR Sbjct: 548 GALCTFVDLTERR 560 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,249,222 Number of extensions: 50205 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 5 Length of query: 430 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 342 Effective length of database: 1,203,190 Effective search space: 411490980 Effective search space used: 411490980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)