BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0049.p
         (626 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...  1168   0.0  

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score = 1168 bits (3021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/604 (91%), Positives = 586/604 (97%)

Query: 1   LEELYEAYLNNPGSVPDNWRAYFDAVQHVPAVDGSNRPDVAHAPVIASFAERAKQGPIRT 60
           +EELYEAYLNNPGSVPDNWRAYFDAVQHVPA DGS RPDVAHAPVIASFAERAKQGPIRT
Sbjct: 22  IEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPDVAHAPVIASFAERAKQGPIRT 81

Query: 61  VVASADTEMGRKRVAATQLIAGYRDLGSRFANLDPLQRQERPSIPELEPTFYGFSDSDMD 120
           V+ASAD++MGRKRVA TQLIAGYRDLGSRFANLDPLQRQERP+IPEL+P+FYGF+D+DMD
Sbjct: 82  VIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQERPNIPELDPSFYGFTDADMD 141

Query: 121 IVFNISNTYFGGETASLRDLLQSLRDTYCRSIGAEFTYISDPAEVRWIQERLEPTRALPQ 180
           IVFNI+NTYFG ETASLRDLLQ LRDTY RSIGAEFTYISD AEVRW++ERLEPTRA+P 
Sbjct: 142 IVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYISDMAEVRWLEERLEPTRAVPS 201

Query: 181 FSAEKKKHILDRLTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEI 240
           FS+EKKKHIL+RLTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEI
Sbjct: 202 FSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEI 261

Query: 241 VIGMAHRGRLNVLVNILGKTPQELFSEFEGHHADDLPAGDVKYHQGFSSDISTPGGPVHL 300
           VIGMAHRGRLNVLVNILGKTPQELFSEFEG HADDLPAGDVKYHQGFSSD+STPGGPVHL
Sbjct: 262 VIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAGDVKYHQGFSSDVSTPGGPVHL 321

Query: 301 SLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQ 360
           SLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQ
Sbjct: 322 SLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQ 381

Query: 361 TRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFAT 420
           TRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFAT
Sbjct: 382 TRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFAT 441

Query: 421 QIAVDYRMQFKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYAEKLAAQ 480
           QIAVDYRM+FKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYA+KL  Q
Sbjct: 442 QIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYADKLVTQ 501

Query: 481 GTIPADGGDVMVKAFRDAMDSGKHTVDPVITNFKSKYAVDWLPFLNRKWTDAADTAVPLA 540
            TIPADGG+ +VKA+R AMD+GKH +DPV+TNFKSKYAVDWLPFLNRKWTDAA+TAVP+A
Sbjct: 502 QTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDWLPFLNRKWTDAAETAVPMA 561

Query: 541 ELKRLATRITTIPEGFKAHALVEKVINDRAAMGRGDLNLDWGMGEHLAYASLVASGYAIR 600
           ELKRLA +ITT+PEGFK H+LVEKV+NDRAAMGRG++NLDWGMGEHLAYASLV+SGYA+R
Sbjct: 562 ELKRLAAKITTVPEGFKVHSLVEKVLNDRAAMGRGEMNLDWGMGEHLAYASLVSSGYAVR 621

Query: 601 LTGH 604
           LTG 
Sbjct: 622 LTGQ 625


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,142,816
Number of extensions: 96113
Number of successful extensions: 275
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 535
Effective length of database: 1,188,985
Effective search space: 636106975
Effective search space used: 636106975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)