BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0043.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312279|ref|YP_003776371.1| GntR family transcription regul...   465   e-132
gi|300313880|ref|YP_003777972.1| transcription regulator protein...   132   2e-32

>gi|300312279|ref|YP_003776371.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  465 bits (1196), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/267 (85%), Positives = 243/267 (91%), Gaps = 6/267 (2%)

Query: 1   MSSSLPNSNNSDAQSVGTSVAGAAPTFSPLYQQIKAFRHXKALITQRLESGEWKPGELIP 60
           MSS LPNSNN+DA + G  VA  APTFSPLYQQIKA      LI QRLE+GEWKPGELIP
Sbjct: 74  MSSILPNSNNADAHAAGAGVASPAPTFSPLYQQIKA------LIMQRLEAGEWKPGELIP 127

Query: 61  SEVELGNRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETHAQFRFLRLTADTDV 120
           SEVELG+RFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHET AQFRFLRL AD+D 
Sbjct: 128 SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDE 187

Query: 121 PQRAENKIIEVKRVRAPAEVARQLDMKSGDSVIFIKRVKSFNGVPTILEEIWLPGLIFKG 180
           PQR ENKIIEVKRVRA AEVARQLDMKSGDSVIFI+RVKSFNGVP ILE+IWLPG IFKG
Sbjct: 188 PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGVPIILEDIWLPGAIFKG 247

Query: 181 LTAERLMEYKGPLYGLFETEFGTRMIRAEEQIRAVGADPESAELLGVPPQTPLLSVDRAS 240
           LTAERL+EY+GPLYGLFE+EFGTRMIRAEE+IRAVGADP++AE LGV PQTPLLSV+RAS
Sbjct: 248 LTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERAS 307

Query: 241 FTYGDKPVEMRRGLYLTLNYHYQSELN 267
           FTYGDKPVEMRRGLYLT N+HYQSEL+
Sbjct: 308 FTYGDKPVEMRRGLYLTTNHHYQSELS 334


>gi|300313880|ref|YP_003777972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 6/239 (2%)

Query: 29  PLYQQIKAFRHXKALITQRLESGEWKPGELIPSEVELGNRFKVSQGTVRKAIDELAAENL 88
           PLY Q++       L+  ++ + +W+PG+ IPSE EL   ++V+ GTVR+AI+ L AE L
Sbjct: 12  PLYLQLRD------LLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETLMAEGL 65

Query: 89  VVRRQGKGTFVATHHETHAQFRFLRLTADTDVPQRAENKIIEVKRVRAPAEVARQLDMKS 148
           V R  G+GTFV      ++ FRF R  +    P   ++ I+  K V APA+ A  L +K 
Sbjct: 66  VERTHGRGTFVRKARFDNSLFRFFRFESADGRPLAPKSVIVSRKLVEAPAQAAEALQLKP 125

Query: 149 GDSVIFIKRVKSFNGVPTILEEIWLPGLIFKGLTAERLMEYKGPLYGLFETEFGTRMIRA 208
              VI + R++  +G P + E I+L    FK L  +   E+   LY L+E E G  +  A
Sbjct: 126 HAKVIELHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGLIVASA 185

Query: 209 EEQIRAVGADPESAELLGVPPQTPLLSVDRASFTYGDKPVEMRRGLYLTLNYHYQSELN 267
            E +         A+LLG+  +TP++ ++R +F    +P+E R+       + Y +E+ 
Sbjct: 186 RETLTVETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYSAEIR 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,883
Number of extensions: 32113
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)