BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0038.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312283|ref|YP_003776375.1| aconitate hydratase [Herbaspiri...   380   e-107
gi|300311598|ref|YP_003775690.1| aconitate hydratase [Herbaspiri...   170   8e-44

>gi|300312283|ref|YP_003776375.1| aconitate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 903

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/202 (90%), Positives = 192/202 (95%), Gaps = 6/202 (2%)

Query: 1   VLKADFNSYGSRRGNHEIMMRGTFANVRIKNLMVPG------VEGGVTVHQPSGEQMAIY 54
           VLKADFNSYGSRRGNHEIMMRGTFANVRIKNLM+P       VEGG+T+HQPSGE+M+IY
Sbjct: 702 VLKADFNSYGSRRGNHEIMMRGTFANVRIKNLMIPAKEDGSRVEGGITIHQPSGEEMSIY 761

Query: 55  DAAMKYVNDGVPTMVFGGEEYGTGSSRDWAAKGTQLLGVKAVITRSFERIHRSNLVGMGV 114
           DAAMKYV +G PTMVFGGEEYGTGSSRDWAAKGTQLLGVKAVI RSFERIHRSNLVGMGV
Sbjct: 762 DAAMKYVAEGTPTMVFGGEEYGTGSSRDWAAKGTQLLGVKAVIARSFERIHRSNLVGMGV 821

Query: 115 LPLQFIGNDSVQTLGITGEETFDLKGLEGEIKPQQEATLVIHRKNGETKEVKLLLRIDTP 174
           LPLQF+GNDSVQ+LGITG+ETFDLKGLEGEIKPQQEATLVIHRKNGETKEVKLLLRIDTP
Sbjct: 822 LPLQFLGNDSVQSLGITGDETFDLKGLEGEIKPQQEATLVIHRKNGETKEVKLLLRIDTP 881

Query: 175 IEVDYYKHGGILPFVLRQLLAA 196
           IEVDYYKHGGILPFVLRQLLAA
Sbjct: 882 IEVDYYKHGGILPFVLRQLLAA 903


>gi|300311598|ref|YP_003775690.1| aconitate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 873

 Score =  170 bits (430), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 8/197 (4%)

Query: 5   DFNSYGSRRGNHEIMMRGTFANVRIKNLMVPGVEGGV-----TVHQPSGEQMAIYDAAMK 59
           DFNSY + RG+H    R TFAN ++ N MV   +G V        +P G+ M +++    
Sbjct: 668 DFNSYATHRGDHLTAQRATFANPKLFNEMVKKADGSVQQGSLARLEPEGKVMRMWETIET 727

Query: 60  YVNDGVPTMVFGGEEYGTGSSRDWAAKGTQLLGVKAVITRSFERIHRSNLVGMGVLPLQF 119
           Y+    P ++  G +YG GSSRDWAAKG +L GV+A++   FERIHR+NL+GMGVLPL+F
Sbjct: 728 YMERKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLEF 787

Query: 120 IGNDSVQTLGITGEETFDLKGLEGEIKPQQEATLVIHRKNGETKEVKLLLRIDTPIEVDY 179
              ++  T  I G ET+D+    G+ +P+ + TLVIHRKNGE  EV +  R+DT  EV  
Sbjct: 788 KAGENRNTYAIDGTETYDVI---GQRRPRADLTLVIHRKNGERVEVPVTCRLDTAEEVSI 844

Query: 180 YKHGGILPFVLRQLLAA 196
           Y+ GG+L    +  L A
Sbjct: 845 YEAGGVLQRFAQDFLEA 861


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 634,075
Number of extensions: 27037
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)