BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0037.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980...   197   4e-52

>gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  197 bits (501), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 122/149 (81%), Gaps = 1/149 (0%)

Query: 1   MIDVALDHLFKSDLDGYDVLVEAVEANSEACALDYDGKVYSVQLLALPVLAWTRFSIASG 60
           +ID ALDHLFK+DLD YDVL+EAVEA SEA +L+++G+ Y VQLL LPVLAWTRF+IASG
Sbjct: 57  LIDAALDHLFKADLDAYDVLIEAVEAGSEATSLEHEGQDYDVQLLVLPVLAWTRFAIASG 116

Query: 61  NLPSEVRDGLFAHLHAHVLADNVHLALAPALYAIEQLPRHHADVFAMTQRMGQAALKQSM 120
            + SE+   + AHLHAHVLA +  LALAPAL++IEQLPR HADVFA+T++MGQ ALK   
Sbjct: 117 PIASEMLSAIGAHLHAHVLAKDARLALAPALFSIEQLPRMHADVFALTRQMGQTALKTGP 176

Query: 121 PQLSLEQTPTAPFLADTRYLIAAVAVIPA 149
            QL  EQ PTA FLADTRY+IAAV V+PA
Sbjct: 177 VQLRGEQPPTAAFLADTRYVIAAV-VVPA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,544
Number of extensions: 25507
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)