BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0036.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980...   249   9e-68

>gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  249 bits (636), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 141/178 (79%), Gaps = 8/178 (4%)

Query: 1   LTRFLPGCNVELLLPQPYYFACREADKRIRPAAIRAADHYLTQTLGVASSELHANIGSFC 60
            TR LPGC+VELLLPQ Y+F CREADKRIRPA+IRAAD++LTQTL ++S++LHA+IG F 
Sbjct: 239 FTRLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDISSADLHASIGGFS 298

Query: 61  ENINGQIDEYRVGFSLGNDDGIVYGIVWPLYEQEDGDEVRDLSAPDSA-------QTPME 113
           E+INGQIDEYR+GFS+G D  +VYG VWPLYEQE G+++  +  P  A        +P++
Sbjct: 299 EDINGQIDEYRIGFSIGGDPTVVYGTVWPLYEQESGEDL-PMMIPGGAGLLEGLPASPLQ 357

Query: 114 EILGVLRDCGIVQIKLHEERYTMEFCDDCGTPLFPAPDGDLVHAEMPEDAPASTEHFH 171
           +IL VLR+CGIV IK H ER+TMEFCDDCG PLFP  +G+LVHAEMPED P   EHFH
Sbjct: 358 QILTVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,547
Number of extensions: 25639
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)