BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0031.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312289|ref|YP_003776381.1| flagellar motor component prote...   525   e-150

>gi|300312289|ref|YP_003776381.1| flagellar motor component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  525 bits (1352), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/313 (86%), Positives = 292/313 (93%), Gaps = 5/313 (1%)

Query: 1   MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60
           MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE
Sbjct: 1   MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60

Query: 61  YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITS-KRSVRAAQAELEK 119
           YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQ+GQLRKGE D+T+ K++++ AQ ELEK
Sbjct: 61  YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQAQQELEK 120

Query: 120 AERARLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 179
            ER RL+ELK R+E AIDS+PTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ
Sbjct: 121 MERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180

Query: 180 PYTREILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGG 239
           PYT+EIL EIG+TLNDVPNKISLSGHTDATPYS GEKGYSNWELSADRANASRRELI GG
Sbjct: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGG 240

Query: 240 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVQNGGSSSLDVSSEA-- 297
           MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE+V+   S SL+V ++A  
Sbjct: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEEMVEK-DSGSLNVPTDASD 299

Query: 298 -EVKDGLSEPAKN 309
            EV+ GL+ PA+N
Sbjct: 300 GEVQQGLNVPARN 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,361
Number of extensions: 32289
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)