BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0030.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312290|ref|YP_003776382.1| flagellar motor component prote...   503   e-144

>gi|300312290|ref|YP_003776382.1| flagellar motor component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  503 bits (1295), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/276 (92%), Positives = 258/276 (93%), Gaps = 12/276 (4%)

Query: 1   MLSVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTY 60
           M SVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNN KAIKATL+ALPTVFKGS Y
Sbjct: 11  MASVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKALPTVFKGSAY 70

Query: 61  TKALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 120
           TKALYMELM+LLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL
Sbjct: 71  TKALYMELMALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 130

Query: 121 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMES 168
           RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL            V  VVHTMES
Sbjct: 131 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVVHTMES 190

Query: 169 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 228
           VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN
Sbjct: 191 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 250

Query: 229 GYAPALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264
           GYAPALSIEFGRKVLFSTERP+FLELEEHVKQA+ K
Sbjct: 251 GYAPALSIEFGRKVLFSTERPTFLELEEHVKQARGK 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 783,690
Number of extensions: 30894
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)