BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0022.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312301|ref|YP_003776393.1| polybetahydroxybutyrate accumul...   341   2e-95

>gi|300312301|ref|YP_003776393.1| polybetahydroxybutyrate
           accumulation regulatory protein PhbF [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score =  341 bits (874), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/177 (91%), Positives = 168/177 (94%)

Query: 1   MTSAKKSGERLIKKYPNRRLYDTQTSSYITLTDVKQLVLDDEEFAVVDAKNGDDLTRSIL 60
           MT+AK S +RLIKKYPNRRLYDTQTSSYITLTDVKQLVLD+EEF VVDAK+GDDLTRSIL
Sbjct: 1   MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 60

Query: 61  LQIILEEESHGAPMFSSAALSQIIRYYGHAMQGMMGSYLEKNIQAFIDIQNKLTENSKGF 120
           LQIILEEESHG PMFSS ALSQIIRYYGHAMQGMMG+YLEKNIQ FIDIQNKL ENSKGF
Sbjct: 61  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 120

Query: 121 YEGKPFSPEMWAQFMNVQGPMMQGMMSNYIEQSKTLFVQMQEQMQSQTKNMFGTFPF 177
           YEGKPFSPEMW QFMNVQGPMMQGMMSNYIEQSK LF+QMQEQMQSQTKNMFGTFPF
Sbjct: 121 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPF 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 509,482
Number of extensions: 17864
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)