BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0017.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312304|ref|YP_003776396.1| permease [Herbaspirillum serope...   243   1e-65

>gi|300312304|ref|YP_003776396.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 260

 Score =  243 bits (619), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/227 (61%), Positives = 168/227 (74%)

Query: 2   LLSAVAAIFLLAGFVKGVVGLGLPTVAVGLLGLFMPPLQAAALLIVPSLVTNVWQLLAGG 61
           +L A   +F+LAGFVKG +GLGLPTVAVGLL L MPP+QAA LLIVPS+VTN WQLL GG
Sbjct: 14  VLPASLPVFMLAGFVKGSIGLGLPTVAVGLLSLMMPPVQAAPLLIVPSMVTNGWQLLTGG 73

Query: 62  RFMWLLRRLWLMLLGIFVGTLLGASVLATDAGGRATVFLGVALVVYAVSGLAAVKFSVNA 121
               L+RRLW +L GI +GTL G S +  D G RA + LG+ALV+YA++GLA+   SV+ 
Sbjct: 74  ALRALVRRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYALAGLASWTPSVSP 133

Query: 122 GSEKYLSPLIGLTTGFVTAATAVFVIPAVPYLQALNLEKDELIQALGLSFTVSTIAMAAG 181
             E++ SP +GL TG VTAAT VFVIPAVPYLQAL L +++LIQALGLSFTVST+A+A  
Sbjct: 134 AQEQWWSPAVGLATGLVTAATGVFVIPAVPYLQALGLPREQLIQALGLSFTVSTLALAVN 193

Query: 182 LAQGGALQMEGAAISAMALAPALGGMFIGQWLRGKISAVLFRRCFFI 228
           L QGGA        S + L PAL GM IG  +RG++ AV FRRCFFI
Sbjct: 194 LGQGGAFSGGVGWASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFI 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 548,431
Number of extensions: 19190
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)