BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0016.p (359 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 420 e-118 gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 253 2e-68 gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 97 3e-21 gi|300312102|ref|YP_003776194.1| LysR family transcription regul... 91 1e-19 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 91 2e-19 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/293 (69%), Positives = 248/293 (84%) Query: 59 MSTRLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVR 118 MS R +LSDLRLFLH+ E+GSIT GA R+H+ALASASARIR+MEDALG LL R RRGV+ Sbjct: 1 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ 60 Query: 119 LTEAGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQ 178 T+AGRAL HHAR + QQM++LRDEL +YA GLKGHIRLL NT+A++EFLP+ L FLA+ Sbjct: 61 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR 120 Query: 179 NPYIDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALA 238 +P+ DI+LEE+LS+E+VQA++DGVAD+GI+ADS +GPLQT PFRQD LVAVL +RH LA Sbjct: 121 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA 180 Query: 239 RRKTLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVG 298 RRK+L FAEL+ +F+GLS SALQ+HL+GHA RAGKRLQYRVRLRSFDGICRMVE +VG Sbjct: 181 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 Query: 299 IAVIPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 +AV+PETAAL M+I +IPLSD W++RQLLICVR E LPG TR+L++ L Sbjct: 241 VAVLPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQAL 293 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 253 bits (646), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/287 (43%), Positives = 189/287 (65%) Query: 63 LDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTEA 122 DL+DLRLF+ +AE S+T A+R +L+L + S RI+ +E G LL RE +GV+LT A Sbjct: 3 FDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLTPA 62 Query: 123 GRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPYI 182 G LLHHA+ QQ++ L+ ++ +Y +G+KG+IR+ NT A++EF+P+ LG FLA++P + Sbjct: 63 GHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 Query: 183 DIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALARRKT 242 ++ LEERL+H+I++ I +G ADIGIVA V LQ + F DRLV H LA + Sbjct: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADAPS 182 Query: 243 LQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAVI 302 L F + ++ IGL GS L L+ G+RL+ R+++RSF+ +CRM+E VGI ++ Sbjct: 183 LPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIGIL 242 Query: 303 PETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLE 349 P +AA R +QTM+++ + LSD W+ R+ + V+ + L H R L+E Sbjct: 243 PRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVE 289 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 6/272 (2%) Query: 63 LDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTEA 122 ++L LR FL VAE S T A++ + S +I+++E+ +G AL LR +GV L+E Sbjct: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKALEEEVGGALFLRSSQGVELSEV 60 Query: 123 GRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRL-LGNTAAISEFLPDALGTFLAQNPY 181 GR LL HA+ Q ++ + A G G +R+ ++A + AL F ++ Sbjct: 61 GRVLLPHAQRAVDQAEQALRAARQAASGETGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 Query: 182 IDIDLEERLSHEIVQAIVDGVADIGIV-ADSVPTGPLQTIPFRQDRLVAVLPRRHALARR 240 ++I L E ++ +++ I D V + P+ L + ++L LPR H LARR Sbjct: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAALGVVELPAEKLKVALPRSHPLARR 180 Query: 241 KTLQFAELVDRNFIGL--SNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVG 298 K+L+ +L NFI + GSAL + + AG Q +V +G Sbjct: 181 KSLRLQDLASENFIMVPRGKGSALYDSIFSACQAAGFDPQVIQLAPQLTSAINLVASGLG 240 Query: 299 IAVIPETAALRCKQTMEINSIPLSDAWAKRQL 330 I+++PE A+ Q ++ + + + + QL Sbjct: 241 ISIVPE--AIEQVQLAQVRYVEIVEPAPRAQL 270 >gi|300312102|ref|YP_003776194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 132/294 (44%), Gaps = 10/294 (3%) Query: 63 LDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTEA 122 L L LR + +A+ GS A A HLA + S I +E+ +G LLLR+R VR + Sbjct: 4 LSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRAQVRPSGI 63 Query: 123 GRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPYI 182 G L+ AR + D+ +E+ GL G +RL +T AI+ LP AL +P I Sbjct: 64 GETLIARARQLLAAADQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQALEQLGRSHPGI 123 Query: 183 DIDLEERLSHEIVQAIVDGVADIGIVA-DSVPTGPLQTIPFRQDRLVAVLPRRHALARRK 241 D+ + S E + + G DIG+VA P L P+R+D ++A LP R Sbjct: 124 DVQVMVLTSQETLARLAAGALDIGLVALPQAPVAGLTVQPWRRDPVMAFLPASWRAPRVV 183 Query: 242 TLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAV 301 T A L + I + + L R G+ R++L D I +V G + Sbjct: 184 T--PAWLAAQPLILNAPETRLSRLTTEWFARGGEHPVARIQLNFNDAIKSLVGAGYGATL 241 Query: 302 IPETAALRCKQTM---EINSIPLSDA-WAKRQLLICVRSREELPGHTRQLLEQL 351 +P A+ + I PL A W R L I R+ + P TR +LE L Sbjct: 242 LPHEASAQGAAVALDPRIVMRPLRPALW--RPLGIAHRTGQPEPA-TRHVLEAL 292 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 2/301 (0%) Query: 59 MSTRLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVR 118 M T + L+ FL +A+ A R H++ ++ SA I+ +E A G L R+ R V Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 119 LTEAGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQ 178 LT G + AR + ++ ++S+Y KG + + + + +LP L + + Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 179 NPYIDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALA 238 P + ++L + +S + + + G DI + A T P D V + H LA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 239 RRKTLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVG 298 ++ ++ +L I L+ +++++HL LR G + + + + ++E +G Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDA-VLRPGGVIHTGLEVEHLATVAALIESGLG 239 Query: 299 IAVIPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQLTGPDVAA 358 ++V+PE + + + +IPL KR LLI L + LLE + G A Sbjct: 240 VSVVPELTLFQFRLP-NLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAE 298 Query: 359 T 359 T Sbjct: 299 T 299 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,096,878 Number of extensions: 44812 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 51 Length of query: 359 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 273 Effective length of database: 1,212,660 Effective search space: 331056180 Effective search space used: 331056180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)