BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0014.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312305|ref|YP_003776397.1| LysR family transcription regul...   144   1e-35
gi|300312111|ref|YP_003776203.1| LysR family transcription regul...   116   2e-27

>gi|300312305|ref|YP_003776397.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 87/101 (86%)

Query: 22  LISPERRGVRLTEAGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFL 81
           L+   RRGV+ T+AGRAL HHAR + QQM++LRDEL +YA GLKGHIRLL NT+A++EFL
Sbjct: 51  LLERGRRGVQTTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFL 110

Query: 82  PDALGTFLAQNPYIDIDLEERLSHEIVQAIVDGVADIGIVA 122
           P+ L  FLA++P+ DI+LEE+LS+E+VQA++DGVAD+GI+A
Sbjct: 111 PEVLARFLARHPHTDIELEEKLSYEVVQAVIDGVADVGIIA 151


>gi|300312111|ref|YP_003776203.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 78/101 (77%)

Query: 22  LISPERRGVRLTEAGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFL 81
           L+  E +GV+LT AG  LLHHA+   QQ++ L+ ++ +Y +G+KG+IR+  NT A++EF+
Sbjct: 49  LLYRESKGVQLTPAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFM 108

Query: 82  PDALGTFLAQNPYIDIDLEERLSHEIVQAIVDGVADIGIVA 122
           P+ LG FLA++P +++ LEERL+H+I++ I +G ADIGIVA
Sbjct: 109 PEILGKFLARHPQVNVALEERLNHDILRGIQEGTADIGIVA 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 711,782
Number of extensions: 23285
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 4
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)