BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0010.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312313|ref|YP_003776405.1| hypothetical protein Hsero_3009...   384   e-108

>gi|300312313|ref|YP_003776405.1| hypothetical protein Hsero_3009
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/220 (82%), Positives = 201/220 (91%)

Query: 11  MLIVLSPAKSLDYDTPATTDIHTKPDFVARSAELIEILKQKSPAQIATLMGISDQLATLN 70
           MLIVLSPAKSLDYDTP TTD+HT P FV RSAELIE+LK KSPA+I +LMGISDQLA LN
Sbjct: 1   MLIVLSPAKSLDYDTPPTTDVHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLAVLN 60

Query: 71  ADRFASWSRKFTSKNSKQAVLAFNGDVYEGLDAASLSVKQLDYVQSHVRILSGLYGALRP 130
            +R+ASWSRKF++KN+KQAVLAFNGDVYEGLDAASL+ +QLDY+Q HVRILSGLYG LRP
Sbjct: 61  VNRYASWSRKFSTKNAKQAVLAFNGDVYEGLDAASLNARQLDYLQGHVRILSGLYGMLRP 120

Query: 131 LDLMQPYRLEMGTRLPNPHGKDLYAFWGEDVTKALNGELAGHKSKVLVNLASEEYFKVVK 190
           LDLMQPYRLEMGT+L NP GKDLYAFWG ++T+ALNGEL   K+ VLVNLASEEYFKVVK
Sbjct: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGSEITEALNGELVAQKTPVLVNLASEEYFKVVK 180

Query: 191 PKVLDARVISPVFEDWKGGKYKIISFYAKRARGLMARYAA 230
           PK+L A+VI+PVFEDWKGGKYKIISFYAKRARGLMARYAA
Sbjct: 181 PKLLKAQVIAPVFEDWKGGKYKIISFYAKRARGLMARYAA 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 812,160
Number of extensions: 32401
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)