BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0069.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspiril...   240   4e-65
gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase [H...    78   4e-16

>gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 144

 Score =  240 bits (612), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/128 (91%), Positives = 120/128 (93%)

Query: 8   SLPVGKMPHLRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPATKRANGRVATIAVNSFLF 67
            LP GK P LRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPAT+RANGRVATIAVNSFLF
Sbjct: 7   ELPPGKAPQLRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPATRRANGRVATIAVNSFLF 66

Query: 68  KHPVFVGDLLSFYADIVKVGKTSITVNVEVYAERNRLQAEVVKVTEATLTYVATDENRKP 127
           K+PVFVGDLLSFYADIVKVG TSITVNVEVYAERNRLQ E+VKVTEATLTYVATDENRKP
Sbjct: 67  KNPVFVGDLLSFYADIVKVGNTSITVNVEVYAERNRLQTEIVKVTEATLTYVATDENRKP 126

Query: 128 RELPPLAP 135
           R LPPL P
Sbjct: 127 RPLPPLDP 134


>gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 77.8 bits (190), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 17  LRVMPMPSDANVYGDVFGGWIMAQVDIAGSLPATKRANGRVATIAVNSFLFKHPVFVGDL 76
           + V+  P  AN  G+V GG I+  +D       ++ A   V T++V+  +F+ P+ VG+L
Sbjct: 10  MTVLMTPDMANFAGNVHGGTILKLLDQVAYACGSRYAGQYVVTLSVDQVMFRQPIHVGEL 69

Query: 77  LSFYADIVKVGKTSITVNVEVYAERNRLQAEVVKVTEATLTYVATDENRKPRELPPLAP 135
           ++F A +   GK+S+ + ++V AE  R Q E   V     T VA D+ RKP  +PPL P
Sbjct: 70  VTFLASVNHTGKSSMEIGIKVVAENIRTQ-ETRHVNSCFFTMVAVDDQRKPIPVPPLRP 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,887
Number of extensions: 18412
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)