BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0068.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans...   455   e-129

>gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC
           transporter permease/ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 634

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/283 (82%), Positives = 255/283 (90%), Gaps = 4/283 (1%)

Query: 1   MRRYP-PSAAPQAARTPSVPAHSDWQTLGTLLPYLWTYKWRVLLALAFLVGAKLTNIGVP 59
           MRRYP  S++PQA   P      DW+ + TLLPYLWTYKWRVLLALAFLVGAKL N+GVP
Sbjct: 1   MRRYPNSSSSPQA---PIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVP 57

Query: 60  LLLKQLVDRMTIGPDNPQALLVLPLSLLVAYGALRLATTVFTELREFIFAKVTQRAVRTI 119
           L+LK+LVD MTI P +PQALLVLPL LLVAYGALRLAT +FTELRE +FA+VTQRAVRTI
Sbjct: 58  LVLKRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTI 117

Query: 120 ALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYALFSILPTLIEIALVLVYL 179
           ALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSY LFSILPTLIEIALVL YL
Sbjct: 118 ALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYL 177

Query: 180 VLHYEIWFTVITAGALALYIVFTITVTEWRTHFRRTMNDLDSRANSKAIDSLLNYETVKY 239
           + HY++WF+VITAGAL  YI+FTITVTEWRTHFRRTMN+LDS AN++AIDSLLNYETVKY
Sbjct: 178 ITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKY 237

Query: 240 FSNEDFEARRYDEGLQRYEAAAVKSQSSLSLLNSGQSAIIAIA 282
           F NE+FEARRYDEGLQRYE AAVKSQSSLSLLN+GQSAIIAIA
Sbjct: 238 FGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIA 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,892
Number of extensions: 27822
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)