BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0067.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 535 e-153 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 265 4e-72 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 241 6e-65 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 230 1e-61 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 226 2e-60 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 535 bits (1379), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/322 (81%), Positives = 288/322 (89%), Gaps = 2/322 (0%) Query: 1 VISGTMSLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKEIADAPD 60 VI G+M+LGD+VLVNAFMIQLYIPLNFLGV+YREIKQSLADMERLFSLLE+++E+AD+ D Sbjct: 292 VIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSAD 351 Query: 61 AKPLATKGAALRFSHIDFSYESKRQILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYRF 120 AKPL T+GA L F H+DFSYE RQILFDVDF V AGTTTAVVGHSGSGKSTLSRLLYRF Sbjct: 352 AKPLKTQGANLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRF 411 Query: 121 YDVDAGAITIDGQDLRHVTQASLRKAIGIVPQDTVLFNDTIGYNIGYGKPGSSKEEIVAA 180 YDVDAGAI IDGQDLR VTQASLR+AIGIVPQDTVLFNDTI YNI YGKPG+++E+IVAA Sbjct: 412 YDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAA 471 Query: 181 AKAAYVHDFIESLPDGYETTVGERGLKLSGGEKQRVAIARTLLKNPAVLIFDEATSALDS 240 AKAAY+HDFIESLPDGY + VGERGLKLSGGEKQRVAIARTLLK+PA+LIFDEATSALDS Sbjct: 472 AKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDS 531 Query: 241 KAEQAIQEQLSEIAESRTTLIIAHRLSTIVDADQILVLEHGRIIERGTHTQLLAADGAYA 300 +AEQAIQ+QL EIA RTTL+IAHRLSTIV+A QILVL+HGRI+ERGTH LL A G YA Sbjct: 532 RAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYA 591 Query: 301 QMWARQQAREDGNEDGEGAEPL 322 QMW RQQA D E+G PL Sbjct: 592 QMWLRQQAGAD--EEGGSPAPL 611 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 265 bits (677), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/278 (48%), Positives = 188/278 (67%), Gaps = 7/278 (2%) Query: 49 LEQNKEIADAPDAKPLATKGAALRFSHIDFSY--ESKRQILFDVDFEVAAGTTTAVVGHS 106 L + ++ DAPDA+PL LRF + FSY + R ++ +D + G +VG S Sbjct: 338 LARAHDVKDAPDAQPLKVSQGELRFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRS 397 Query: 107 GSGKSTLSRLLYRFYDVDAGAITIDGQDLRHVTQASLRKAIGIVPQDTVLFNDTIGYNIG 166 G+GKST+ LL RFYD++ G ITIDGQD+ HVTQ SLR IG+V QDT L + ++ NI Sbjct: 398 GAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENIT 457 Query: 167 YGKPGSSKEEIVAAAKAAYVHDFIESLPD-----GYETTVGERGLKLSGGEKQRVAIART 221 YG+P +S E+ AA+ A HDFI +L D GY+ VGERG+KLSGG++QR+AIAR Sbjct: 458 YGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARV 517 Query: 222 LLKNPAVLIFDEATSALDSKAEQAIQEQLSEIAESRTTLIIAHRLSTIVDADQILVLEHG 281 +LK+ +L+ DEATSALDS+ E AIQ L ++ E +T + IAHRLSTI D+++VL+ G Sbjct: 518 MLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQG 577 Query: 282 RIIERGTHTQLLAADGAYAQMWARQQAREDGNEDGEGA 319 RI+E+G+H +LLAA+G YA++W+ Q G E+ + A Sbjct: 578 RIVEQGSHAELLAANGLYARLWSHQSGGFLGEEEEDAA 615 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 241 bits (615), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 191/313 (61%), Gaps = 3/313 (0%) Query: 1 VISGTMSLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKEIADAPD 60 V+ MS+G+LV N Q+ P+ L ++ + +Q M RL +L+ E+A + Sbjct: 409 VVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAG--N 466 Query: 61 AKPLATKGAALRFSHIDFSYESKR-QILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYR 119 L A+ F + F Y + +++ + ++ G +VG SGSGKSTL++L+ R Sbjct: 467 RTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQR 526 Query: 120 FYDVDAGAITIDGQDLRHVTQASLRKAIGIVPQDTVLFNDTIGYNIGYGKPGSSKEEIVA 179 Y + G I++DGQD+ + ASLR+ IG+V Q+ LF+ +I NI P + E+I+ Sbjct: 527 LYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIE 586 Query: 180 AAKAAYVHDFIESLPDGYETTVGERGLKLSGGEKQRVAIARTLLKNPAVLIFDEATSALD 239 AAK A HDFI LP+GY+T VGE+G LSGG++QR+AIAR L+ NP +LIFDEATSALD Sbjct: 587 AAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALD 646 Query: 240 SKAEQAIQEQLSEIAESRTTLIIAHRLSTIVDADQILVLEHGRIIERGTHTQLLAADGAY 299 ++E+ IQ+ + +I RT LIIAHRLS + DAD+I+V+E GR+ E G+H +L+ G Sbjct: 647 YESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGI 706 Query: 300 AQMWARQQAREDG 312 R QA G Sbjct: 707 YAHLHRLQAGHAG 719 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 230 bits (586), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/311 (45%), Positives = 198/311 (63%), Gaps = 5/311 (1%) Query: 1 VISGTMSLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKEIADA-- 58 V+ G+MS G+L + + L L + + +++ ERL LL + + Sbjct: 300 VMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLL 359 Query: 59 PDAKPLAT-KGAALRFSHIDFSYESK--RQILFDVDFEVAAGTTTAVVGHSGSGKSTLSR 115 P+ P T GAAL +DF Y S+ L + V G T A+VG SG+GK+TL + Sbjct: 360 PEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQ 419 Query: 116 LLYRFYDVDAGAITIDGQDLRHVTQASLRKAIGIVPQDTVLFNDTIGYNIGYGKPGSSKE 175 LL RFYD G I +DG D+R++ +LR AIGIVPQDTV+F+ NI +G+P +S Sbjct: 420 LLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDA 479 Query: 176 EIVAAAKAAYVHDFIESLPDGYETTVGERGLKLSGGEKQRVAIARTLLKNPAVLIFDEAT 235 E++AAA+ A H+FIE LP Y +GERG++LSGG++QR+AIAR LLKNP +L+ DEAT Sbjct: 480 EVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEAT 539 Query: 236 SALDSKAEQAIQEQLSEIAESRTTLIIAHRLSTIVDADQILVLEHGRIIERGTHTQLLAA 295 SALD+++E+ +Q L RTTL+IAHRL+T+ AD+I+VLEHGRI+E GTH +L+A Sbjct: 540 SALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVAR 599 Query: 296 DGAYAQMWARQ 306 DG YA + A Q Sbjct: 600 DGLYAGLAALQ 610 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 199/312 (63%), Gaps = 1/312 (0%) Query: 1 VISGTMSLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLEQNKEIADAPD 60 V S +++G L A++ + Y L+ + I +++ A +R+F +L+ + + + Sbjct: 435 VSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPAN 494 Query: 61 AKPLATKGAALRFSHIDFSYESKRQILFDVDFEVAAGTTTAVVGHSGSGKSTLSRLLYRF 120 L A+ +I F Y R ++ ++ +A G +VGHSGSGKST+ L+ RF Sbjct: 495 PVHLEKVQGAIEVRNIGFRY-GNRAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRF 553 Query: 121 YDVDAGAITIDGQDLRHVTQASLRKAIGIVPQDTVLFNDTIGYNIGYGKPGSSKEEIVAA 180 YDV GAI IDG D+R + + R+ IG+V Q+ LF TI NI YGKP +++EEI+AA Sbjct: 554 YDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAA 613 Query: 181 AKAAYVHDFIESLPDGYETTVGERGLKLSGGEKQRVAIARTLLKNPAVLIFDEATSALDS 240 A+AA+ H+FI LP GY++ VGERG LSGGE+QR++IAR LL +P +LI DEATS++D+ Sbjct: 614 ARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDT 673 Query: 241 KAEQAIQEQLSEIAESRTTLIIAHRLSTIVDADQILVLEHGRIIERGTHTQLLAADGAYA 300 E+ IQ+ L + + RTT+ IAHRLST+ AD+++VL+ G+++E G H +L+A +G Y Sbjct: 674 TTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYY 733 Query: 301 QMWARQQAREDG 312 +++ Q +G Sbjct: 734 KLYQAQARNPEG 745 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,007,351 Number of extensions: 41766 Number of successful extensions: 510 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 395 Number of HSP's successfully gapped: 130 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)