BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0066.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313153|ref|YP_003777245.1| transcription regulator protein... 582 e-167 gi|300313854|ref|YP_003777946.1| LysR family transcription regul... 300 1e-82 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 82 7e-17 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 79 7e-16 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 67 3e-12 >gi|300313153|ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 582 bits (1501), Expect = e-167, Method: Compositional matrix adjust. Identities = 272/310 (87%), Positives = 293/310 (94%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME+KWLEDF+SLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLG+DLIDRTSYPTRLTAA Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 GEVFYEQAV MLGQINNTRALLRGKRP AQTT+DFAVPHTLSLTY PKWLS+LESGFGA+ Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDML+MG E++RPYSRCDR Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 GKPDYVFPGS+KAP+PFLSYT NAYLGRMVEL++ D K+PLHL+KHYETDMSESLKMMAL Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 241 EGHGVAFLPESSVTREVRNKQLARTDGAQGEWEVEMEIRLYRERPTPQRSGKVVVARLWD 300 EGHGVAFLPESSV REVRN+QLARTD GEWEVEMEIRLYRERPT QR+GK +VARLW+ Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 Query: 301 YLQELEEGRK 310 YL EL+ R+ Sbjct: 301 YLVELDAQRQ 310 >gi|300313854|ref|YP_003777946.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 300 bits (768), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/312 (51%), Positives = 212/312 (67%), Gaps = 15/312 (4%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME KW+EDF+S+ ET +FSRSA+LR+VTQPAF RRI+SLE WLG++L DR+SYP LT A Sbjct: 1 MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTTVDFAVPHTLSLTYFPKWLSSLESGFGAL 120 GE F A EML Q R +LRG+ AQ+ V A+PHTL LT FPK LS +E GA+ Sbjct: 61 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSAVRLAMPHTLLLTVFPKLLSEIEKSIGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLSMGKESVRPYSRCDRT 180 +T ++A NVHDAVM +VE CDLLLCY H +Q + LD+ RYD+LS+GKE +RPY + Sbjct: 121 STTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYDVLSLGKEPLRPYVKTLPN 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTPNAYLGRMVELILTDAKKPLHLEKHYETDMSESLKMMAL 240 G P YV PG+ P PFLSY+P + L R+VE L + + +HL + +ETD++E LK MA+ Sbjct: 181 GLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHSSPRQVHLFRRFETDLAEGLKSMAV 240 Query: 241 EGHGVAFLPESSVTREVRNKQL----ARTDG---AQGEWEVEMEIRLYR--ERPTPQRSG 291 EGHG+A+LP S+V RE+ +L A TD QG W EM+IR+YR + P Sbjct: 241 EGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQGLWCDEMDIRVYRRLDGANPD--- 297 Query: 292 KVVVARLWDYLQ 303 + R+W+YL+ Sbjct: 298 ---IDRIWNYLK 306 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 81.6 bits (200), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 4/90 (4%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME + L+ F ++A T SFSR+AEL H+ QP SR+I+ LE LG +LIDR S P LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GEVFYEQAVEMLGQINN----TRALLRGKR 86 G+ FYEQ +++L ++ TR + RG++ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQ 90 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 56/79 (70%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 M+ + L+ F+++A TR+F+R++E H+ QP SR+IQ LE LG L+ R S P RLT A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GEVFYEQAVEMLGQINNTR 79 G VFYEQA+++L +++ + Sbjct: 61 GRVFYEQALQILNRLDQLK 79 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 6/92 (6%) Query: 1 METKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 +E + L F ++AET F R+AEL H++QP +R+I +LE LG+ L DR+ +LTAA Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 61 GEVFYEQAVEMLGQINNTRALLRGKRPAAQTT 92 G+ FY E+ +AL R KR + ++ Sbjct: 62 GKYFYRDTTEIF------KALERAKRNVSSSS 87 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,025,683 Number of extensions: 40793 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 12 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)