BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0059.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 436 e-124 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 209 1e-55 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 112 4e-26 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 105 2e-24 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 105 3e-24 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 436 bits (1122), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/231 (93%), Positives = 223/231 (96%) Query: 1 MFSNFDFDIIQRSWFYLITTGLKFTLVLTVSAMVGGVILGTFLAMMRLSSNKPLSFIATT 60 MFSNFDFD+IQRSWFYL TTGLKFTL+LT SAM GG+ILGT LAMMRLSSNKPLSFIATT Sbjct: 1 MFSNFDFDVIQRSWFYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATT 60 Query: 61 YVNLIRSVPLVLVIFWFYFLVPFIGAWVIGANEPIQVGAFQSALITFILFEAAYYCEIMR 120 YVNLIRS+PLVLVIFWFYFLVPFIGAW+IGA+EPIQVGAFQSALITFILFEAAYYCEIMR Sbjct: 61 YVNLIRSIPLVLVIFWFYFLVPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMR 120 Query: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNVTPILLTQTIVLFQDVSLVYVLGS 180 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRN+TPILLTQTIVLFQDVSLVYVLGS Sbjct: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGS 180 Query: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFVLSQTVKRFQHKIAIIR 231 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSF LS VKRFQ KIAIIR Sbjct: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFGLSTLVKRFQKKIAIIR 231 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 209 bits (532), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 152/228 (66%), Gaps = 2/228 (0%) Query: 1 MFSNFDFDIIQRSWFYLITTGLKFTLVLTVSAMVGGVILGTFLAMMRLSSNKPLSFIATT 60 M FDF + + ++ GL +L +T+ A+V G++ GT LAMMRLS + PL + A Sbjct: 1 MAYEFDFSAVTPAALRVLGDGLLVSLKITLVAIVFGMVWGTLLAMMRLSRHSPLQWFAAG 60 Query: 61 YVNLIRSVPLVLVIFWFYFLVPFIGAWVIGANEPIQVGAFQSALITFILFEAAYYCEIMR 120 YVNL RS+PLV+V+ WF+ +VP + + G + P SAL+ F LFEAAYY EI+R Sbjct: 61 YVNLFRSIPLVMVLLWFFLIVPQLLQKLFGLS-PANDLRMTSALVAFALFEAAYYAEIIR 119 Query: 121 SGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNVTPILLTQTIVLFQDVSLVYVLGS 180 +GI S+ RGQ+ A YA+G+ Y Q MG V+LPQAFRN+ P+LLTQ IVLFQD SLVYV + Sbjct: 120 AGINSVSRGQMAAAYALGLTYPQAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYV-SA 178 Query: 181 VPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFVLSQTVKRFQHKIA 228 + DF A I +R+GR++EM VYF++ F +S VKR++ K+A Sbjct: 179 LADFFGRAYSIGERNGRIIEMLFVAGAVYFIICFSMSLMVKRYRKKVA 226 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 112 bits (279), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 4 NFDFDIIQRSWFYLITTGLKFTLVLTVSAMVGGVILGTFLAMMRLSSNKPLSFIATTYVN 63 +FDF +I S L+ G K T+++T + +VGG ++G +MR N L I YV Sbjct: 2 DFDFSVITDSLPALLE-GAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVE 60 Query: 64 LIRSVPLVLVIFWFYFLVPFIGAWVIGANEPIQVGAFQSALITFILFEAAYYCEIMRSGI 123 +R P+V+ + + YF +P + +G I+V +A+ + ++ AY EI+R Sbjct: 61 FVRGTPIVVQVMFIYFALPVL----LG----IRVDPMTAAVTSIVVNSGAYIAEIVRGAF 112 Query: 124 QSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNVTPILLTQTIVLFQDVSLVYVLGSVPD 183 S+PRG AG A+G+ W+++ V+ P A R + P + Q IV +D SL V+G V + Sbjct: 113 LSVPRGLREAGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIG-VGE 171 Query: 184 FVTSASKIAQRDGRLVEMYLFVAVVYFVLSFVLSQTVKRFQHKIAII 230 +I + R VE+++ VA +Y + V++ ++ F+ ++ I+ Sbjct: 172 LTRQGQEIMAANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKRMRIL 218 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 115/211 (54%), Gaps = 2/211 (0%) Query: 20 TGLKFTLVLTVSAMVGGVILGTFLAMMRLSSNKPLSFIATTYVNLIRSVPLVLVIFWFYF 79 +GL T+ L +SA + ++LGTFL ++R N+ LS A YV L R+VPL++ IF +YF Sbjct: 26 SGLGVTVALGLSAWILALVLGTFLGILRTLPNRALSGFAACYVELFRNVPLLVQIFIWYF 85 Query: 80 LVPFIGAWVIGANE-PIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIG 138 +P + W P F A++ +F AA CE +RSGI+S+PRGQ AG A+G Sbjct: 86 AMPELLPWGDAVKALPPMTQQFVMAMLCLGMFTAARVCEQVRSGIESLPRGQKGAGLALG 145 Query: 139 MNYWQMMGNVVLPQAFRNVTPILLTQTIVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRL 198 + Q V+LP A R V P L ++ + +F++ ++ +G + + ++ + Sbjct: 146 LTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKNSAVASTIGLL-ELAAQGRQLVDYTAQP 204 Query: 199 VEMYLFVAVVYFVLSFVLSQTVKRFQHKIAI 229 E ++ V + Y +++ + ++ + K ++ Sbjct: 205 YEAFIAVTLAYMLINICVMSLMRILERKTSL 235 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%) Query: 4 NFDFDIIQRSWFYLITTGLKFTLVLTVSAMVGGVILGTFLAMMRLSSN---------KPL 54 +F + IIQ + L G+ TL +++ +++ G ++G + M+RL+ K + Sbjct: 2 DFRWSIIQ-GYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSM 60 Query: 55 SFIATTYVNLIRSVPLVLVIFWFYFLV-PFI-----GAWVIGANEPI---QVGAFQSALI 105 ++A YV R PL + I +F V P + G + G GAF S + Sbjct: 61 RWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 Query: 106 TFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNVTPILLTQT 165 L AY EI R+GIQSI RGQ +A ++GMNY M VVLPQAFR + P L + Sbjct: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 166 IVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVEMYLFVAVVYFVLSFVLSQTVKRFQH 225 I L +D SLV +G + + +A +A R E Y+ ++V+YF ++ L+ V R + Sbjct: 181 ITLLKDSSLVSAIG-LAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLES 239 Query: 226 K 226 K Sbjct: 240 K 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.333 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,558 Number of extensions: 24672 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 19 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 129 (54.3 bits)