BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0058.p
         (78 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo...   144   2e-36
gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo...   107   2e-25
gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa...    75   7e-16
gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas...    69   6e-14
gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa...    69   9e-14

>gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  144 bits (362), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 70/71 (98%)

Query: 1  MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MIELNNVSKWYGSFQVLTDC+TSV KGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV
Sbjct: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60

Query: 61 DGVSVGDPKTN 71
          DGVSVGDPKTN
Sbjct: 61 DGVSVGDPKTN 71


>gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  107 bits (267), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 58/71 (81%)

Query: 1  MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L +VSK+YG F+VL+ C   +AKG+VVVVCGPSGSGKSTLIKT+N LEP Q+G+IT+
Sbjct: 1  MITLQDVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITI 60

Query: 61 DGVSVGDPKTN 71
          DGV V D  TN
Sbjct: 61 DGVKVNDRSTN 71


>gi|300310496|ref|YP_003774588.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 75.5 bits (184), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 49/65 (75%)

Query: 1  MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MIE+  +SK +G  +VL D + SVA+G+VV + GPSGSGKST+++ +NGLE +++G I +
Sbjct: 1  MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60

Query: 61 DGVSV 65
          DG  V
Sbjct: 61 DGQRV 65


>gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 69.3 bits (168), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query: 1  MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          M+E  +VSK +GS  VL     ++ KG+VVV+ GPSGSGKSTL++ +N LE    G + V
Sbjct: 1  MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60

Query: 61 DGVSV 65
          DG+SV
Sbjct: 61 DGISV 65


>gi|300310829|ref|YP_003774921.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 68.6 bits (166), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 45/62 (72%)

Query: 1  MIELNNVSKWYGSFQVLTDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          ++E+NN++K +GS QVL   + SV +G VV + G SGSGKST+++ +NGLE    G+ITV
Sbjct: 3  IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62

Query: 61 DG 62
           G
Sbjct: 63 AG 64


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 229,988
Number of extensions: 7135
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 18
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 18
Length of query: 78
Length of database: 1,619,870
Length adjustment: 49
Effective length of query: 29
Effective length of database: 1,387,855
Effective search space: 40247795
Effective search space used: 40247795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)