BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0057.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 317 2e-88 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 252 1e-68 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 193 5e-51 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 189 7e-50 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 177 5e-46 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 317 bits (813), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 151/165 (91%), Positives = 159/165 (96%) Query: 5 RIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVTEATEKGLKYLDRVGLIAQKDKFPGQL 64 RIGMVFQNFELFPHLSIRENLTIGQ+KVLGRS EATEKGLKYLDRVGL+A KDKFPGQL Sbjct: 78 RIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKYLDRVGLLAHKDKFPGQL 137 Query: 65 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG 124 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG Sbjct: 138 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG 197 Query: 125 FARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKIITH 169 FARKVANRV+FMDKG++VEDC K++FF PRS+RARDFLAKIITH Sbjct: 198 FARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKIITH 242 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 252 bits (643), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/167 (73%), Positives = 142/167 (85%), Gaps = 2/167 (1%) Query: 5 RIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVTEATEKGLKYLDRVGLIAQKDKFPGQL 64 R+GMVFQ+FELFPHL+I +NLT+ Q+KVLGR EA + G+KYL+RVGL A K+PGQL Sbjct: 78 RVGMVFQHFELFPHLTIIQNLTLAQIKVLGRKKDEAHQHGMKYLERVGLKAHAGKYPGQL 137 Query: 65 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG 124 SGGQQQRVAIARAL+MDPI MLFDEPTSALDPEM+NEVLDVMV LAQEGMTM+ VTHEMG Sbjct: 138 SGGQQQRVAIARALAMDPICMLFDEPTSALDPEMVNEVLDVMVELAQEGMTMVCVTHEMG 197 Query: 125 FARKVANRVIFMDKGLIVEDCKKEDFF--GSPRSDRARDFLAKIITH 169 FAR VA+RVIFMD+G IVED K+DFF G S R+R FL+KI++H Sbjct: 198 FARMVAHRVIFMDQGSIVEDRSKDDFFAGGGDHSARSRQFLSKILSH 244 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 193 bits (491), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 94/162 (58%), Positives = 123/162 (75%) Query: 6 IGMVFQNFELFPHLSIRENLTIGQVKVLGRSVTEATEKGLKYLDRVGLIAQKDKFPGQLS 65 +GMVFQ F LFPH+++ ENL + ++V S EA K L +VGL+ + D FP QLS Sbjct: 79 LGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKLLQKVGLLDKIDAFPNQLS 138 Query: 66 GGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMGF 125 GGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM LA+EGMTM+VVTHEMGF Sbjct: 139 GGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGF 198 Query: 126 ARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKII 167 AR+V++RV+F+D+G+I+E+ + G P +R RDFL K++ Sbjct: 199 AREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 189 bits (481), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 92/163 (56%), Positives = 118/163 (72%) Query: 5 RIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVTEATEKGLKYLDRVGLIAQKDKFPGQL 64 R+GMVFQ F LFPH ++ EN+T G + V G + +A + + LD+VGL A+ D +P QL Sbjct: 78 RVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSLLDKVGLAARCDAYPAQL 137 Query: 65 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG 124 SGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM LA +GMTM+VVTHEMG Sbjct: 138 SGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRTLAADGMTMIVVTHEMG 197 Query: 125 FARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLAKII 167 FAR+VA+RV F+ G IVE P+ R +DFL ++I Sbjct: 198 FAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 177 bits (448), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/160 (54%), Positives = 116/160 (72%) Query: 5 RIGMVFQNFELFPHLSIRENLTIGQVKVLGRSVTEATEKGLKYLDRVGLIAQKDKFPGQL 64 ++GM+FQ F LFPHLS+ N+ I + V G S EA + L++VGL + D +P QL Sbjct: 80 KVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKANLEKVGLGHKFDAYPDQL 139 Query: 65 SGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMG 124 SGGQQQRVAIARALSM P A+L DE TSALDPE++NEVL VM GLA+EGMT+++VTHEM Sbjct: 140 SGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMRGLAKEGMTLLMVTHEMR 199 Query: 125 FARKVANRVIFMDKGLIVEDCKKEDFFGSPRSDRARDFLA 164 FAR+V NR++FM +G + E E+ FG+P++ + F+ Sbjct: 200 FAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 485,708 Number of extensions: 17930 Number of successful extensions: 328 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 128 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)