BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0047.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847...   285   3e-78

>gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847
           [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  285 bits (728), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/236 (63%), Positives = 189/236 (80%), Gaps = 2/236 (0%)

Query: 1   MSISAPKMTIKRHMPWPLRAVFLAVVVGLGGALAMLAYDLGRNNFAGLNPDG-MRDQVVE 59
           M+ISAPKMTIKRH+PWPL A+  AVVV +G A A+  Y LGRN+  GL   G   +QV +
Sbjct: 1   MTISAPKMTIKRHLPWPLMALLWAVVVAVGAAAAVWTYQLGRNHLPGLQLQGDASEQVEQ 60

Query: 60  LKEQVKKLSAEREQLSTSANAAESQLNIERSAQAQLAGQIKTLVTENNKLKEDLSFFESL 119
           L EQVKKLSAE E+L +++NA++++L I +SAQAQLA Q+K L  E N+ KEDL+FF+SL
Sbjct: 61  LSEQVKKLSAENERLQSASNASQNELKIAQSAQAQLATQVKNLEAEINRQKEDLAFFDSL 120

Query: 120 LPTNVGVDGITIQRLKAEVVVPNQVRYQLLAIQGEKG-RQFVGNLQLAVTVLQGGKSVII 178
           LPTN+G  GITIQR KAE   PNQ+RY++L +QG  G +QF GNLQL+V ++QGGKS II
Sbjct: 121 LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKSAII 180

Query: 179 NFPEQNATDPARYKLAFKYYQRVEGVLTLPEGATIKAIQARVLERGQMRAQQSVNL 234
           NFPE N+TD ARY+LAFKYYQRVEG+L +PEGA+IK++  RVL+RGQ+RAQQSV+L
Sbjct: 181 NFPESNSTDLARYRLAFKYYQRVEGLLNIPEGASIKSVAVRVLDRGQVRAQQSVDL 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 553,456
Number of extensions: 18563
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)