BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0045.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845...   218   1e-58
gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831...   150   3e-38

>gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  218 bits (554), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 109/112 (97%)

Query: 1   MNAVAEIPETSMPAPMVFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE 60
           MNAVAE+ +T MPAP+ FSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE
Sbjct: 1   MNAVAELQQTDMPAPINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE 60

Query: 61  IVNEDDTTMTKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTT 112
           IVNEDDTTM+KNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTT
Sbjct: 61  IVNEDDTTMSKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTT 112


>gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831
           [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  150 bits (380), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 85/99 (85%)

Query: 14  APMVFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNG 73
           AP++F+DSA AKV++LI EEGN +LKLR++V GGGCSGF+YGF FD+ VNEDD  + +NG
Sbjct: 11  APLIFTDSAVAKVSELISEEGNTELKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNG 70

Query: 74  VQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTT 112
           V LL+D+MS QYL GAEI Y++ LEG++F+IKNPNATTT
Sbjct: 71  VSLLVDAMSMQYLNGAEIGYEEGLEGSRFIIKNPNATTT 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 350,096
Number of extensions: 13018
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)