BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0041.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312322|ref|YP_003776414.1| two component hybrid sensor his...    74   4e-15
gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas...    72   2e-14
gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C...    67   7e-13
gi|300311949|ref|YP_003776041.1| two component response regulato...    66   1e-12
gi|300309955|ref|YP_003774047.1| two-component system sensor his...    65   2e-12

>gi|300312322|ref|YP_003776414.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 73.9 bits (180), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 12  ILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDGYQT 71
           +LVVDDS T+R      L   G+QV +A DG D  + +   + DL+  D+ MPR+DG + 
Sbjct: 655 VLVVDDSLTVRELERKLLTNRGYQVTVAVDGMDGWNAVRADSFDLVITDIDMPRMDGIEL 714

Query: 72  CALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTK-PFTEDGMLQAVRTYAG 130
            +LI+  A   + PV+++S KD   DR    G   GA  + TK  F ++ +LQAV    G
Sbjct: 715 VSLIRGAANLQSLPVMIVSYKDREEDR--QRGLEAGADHYFTKSSFHDESLLQAVTDLIG 772


>gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score = 71.6 bits (174), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 9   SFTILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDG 68
           S TIL VDDS ++R+     L  AG+ V  A DG DAL +    T DL+  D  MPR+DG
Sbjct: 2   SKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDG 61

Query: 69  YQTCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTY 128
                 +++   +   P++ML+++    D     G   GA  ++ KPF    + + VR  
Sbjct: 62  LTLIRSLRELTSYARVPILMLTTE--FSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 119

Query: 129 AG 130
            G
Sbjct: 120 IG 121


>gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 66.6 bits (161), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 12  ILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQL-GDCTPDLIFCDVLMPRLDGYQ 70
           ILVVDDS+T+R     FL + G  V LA DG D LS+L GD    L+  DV MP +DG  
Sbjct: 4   ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63

Query: 71  TCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTYAG 130
               I+      +  ++ML++++    +  + G   G   ++ KPF  + +L   +   G
Sbjct: 64  MAEKIRSELGNASVNIIMLTTENSPIMK--ERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121


>gi|300311949|ref|YP_003776041.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 7   RHSFTILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRL 66
           RH   +L+VDD        +  L  +GH V++A DG  AL +L   TPDLI  D +MP +
Sbjct: 8   RH--VVLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGI 65

Query: 67  DGYQTCALIKKNARFHATPVVMLSSKDGLFD-RAXDSGAIVGAAAFMTKPF 116
           DG++TC  IK+  R    PVV ++   GL +      G  VG   ++TKP 
Sbjct: 66  DGFETCRRIKQVRRVAHVPVVFMT---GLSETEHVVRGFEVGGIDYVTKPI 113


>gi|300309955|ref|YP_003774047.1| two-component system sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 64.7 bits (156), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 11  TILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDGYQ 70
            IL+VDDS ++R++ +  L  AG+ V  A DG  AL+ L     +L+  D+ MP LDG  
Sbjct: 4   NILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGLS 63

Query: 71  TCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAV 125
               +K+   +  TPV+ML+++    +     G   G  A++ KPF    +L AV
Sbjct: 64  FVREMKQMPAYKFTPVIMLTTESS--EARKQEGKAAGIRAWVHKPFQPPVLLDAV 116


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,209
Number of extensions: 15154
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 17
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 17
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)