BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0037.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313134|ref|YP_003777226.1| twitching motility transmembran...   270   9e-74

>gi|300313134|ref|YP_003777226.1| twitching motility transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  270 bits (689), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 143/220 (65%), Positives = 177/220 (80%)

Query: 1   MLQSQGGNSPREAAAAAQLVLLTLRLGRSANEFLTSEGVNPETAFLLGKDVNTFRDIIDG 60
           MLQSQ   +PRE  AA+QLV+LTLRLGRSANEFLTSEGVNPETAF+LGKD+  F D +  
Sbjct: 220 MLQSQSRPTPREMNAASQLVMLTLRLGRSANEFLTSEGVNPETAFMLGKDITAFGDQLTS 279

Query: 61  FLNGSEILGINAVRDKDVRDKLNELEKVFGEYQPLVANILGNLQNFIAAKQSEQLVFLEN 120
             +G+E+L +    D D+R+KL+ELE+VF +YQP +A ILG+LQNFIAAKQ+E+LVF+EN
Sbjct: 280 LRDGNEMLRLRPASDPDLREKLDELERVFAQYQPQIAGILGHLQNFIAAKQAERLVFVEN 339

Query: 121 ETLKQHLTVLQNDYRQAQETRSWTFWIMLLSMGLALVCGVGISWVQLQSSRRNAEEAELR 180
           ETLK+ LT LQ+DYR A ++RSWTFW ML++M +AL+  +GI+ VQLQSSR NA  AE R
Sbjct: 340 ETLKRQLTELQDDYRIALKSRSWTFWAMLVTMVMALLSAIGIALVQLQSSRNNAAAAEAR 399

Query: 181 RQEAEAQRLHAQQQEERAMRTNAINQAAILRLMNELQKVA 220
           RQ+AE QR  AQQ+EE+AMR N + Q AILRLM ELQKVA
Sbjct: 400 RQQAELQRQLAQQEEEKAMRVNHLTQTAILRLMTELQKVA 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 525,172
Number of extensions: 16976
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)