BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0036.p (151 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313134|ref|YP_003777226.1| twitching motility transmembran... 188 2e-49 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 80 7e-17 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 77 7e-16 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 76 1e-15 gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis tra... 75 3e-15 >gi|300313134|ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 753 Score = 188 bits (477), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/118 (82%), Positives = 109/118 (92%) Query: 19 MLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQIQETSKRIKRL 78 MLEMS+QIT +S+SA++SADVARH+V+ AERG +AVE+A+K MN IREQIQETS RI RL Sbjct: 514 MLEMSMQITGISVSADESADVARHAVLAAERGERAVENAIKAMNGIREQIQETSGRITRL 573 Query: 79 GESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSSA 136 GESSQ IGEITELISDIT++TNVLALNAAIQAASAGEAGRGFSVVAEEVQ LAERSSA Sbjct: 574 GESSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSA 631 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 80.1 bits (196), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 74/129 (57%), Gaps = 14/129 (10%) Query: 8 QARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQ 67 QA + +T SM E++ + + A ++ D+A + +A RG AV MNEI Sbjct: 298 QAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEI--- 354 Query: 68 IQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEV 127 ESS +I +I LI I QTN+LALNAA++AA AGE GRGF+VVA EV Sbjct: 355 -----------SESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 403 Query: 128 QRLAERSSA 136 + LA+RS+A Sbjct: 404 RSLAQRSAA 412 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 76.6 bits (187), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 14/129 (10%) Query: 8 QARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQ 67 QA + +T SM E++ + S +A ++ +A ++ +A +G + V + MNEI Sbjct: 297 QAASLEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEI--- 353 Query: 68 IQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEV 127 +SS ++ +I +I I QTN+LALNAA++AA AGE GRGF+VVA EV Sbjct: 354 -----------SDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 402 Query: 128 QRLAERSSA 136 + LA+RS+A Sbjct: 403 RSLAQRSAA 411 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 75.9 bits (185), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 14/129 (10%) Query: 8 QARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQ 67 QA + +T +M E++ + + + +A ++ +A + +AERG + V + V+ M+EI+ Sbjct: 423 QASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKT- 481 Query: 68 IQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEV 127 SS+ I +I +I I QTN+LALNAA++AA AGE GRGF+VVA EV Sbjct: 482 -------------SSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 528 Query: 128 QRLAERSSA 136 + LA+RS++ Sbjct: 529 RSLAQRSAS 537 >gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 14/129 (10%) Query: 8 QARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQ 67 QA + +T SM E++ + S +A ++A++A+ + +A +G + V D V M++I Sbjct: 323 QASSLEETASSMEELTSTVQQNSANARQAAEMAQSASGIAGQGGELVGDVVATMDDI--- 379 Query: 68 IQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEV 127 S+++I +I +I I QTN+LALNAA++AA AGE GRGF+VVA EV Sbjct: 380 -----------DASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 428 Query: 128 QRLAERSSA 136 + LA+RS+A Sbjct: 429 RSLAQRSAA 437 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.123 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 332,070 Number of extensions: 9327 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 69 Length of query: 151 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 74 Effective length of database: 1,255,275 Effective search space: 92890350 Effective search space used: 92890350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)