BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0035.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313134|ref|YP_003777226.1| twitching motility transmembran...   139   7e-35

>gi|300313134|ref|YP_003777226.1| twitching motility transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  139 bits (349), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 86/112 (76%)

Query: 1   MIQADTHDAVAAMEKSTAGVVDGAKLSDAAGASLSDIRRVSNQLAELIQDISSSTGHQAT 60
           MIQADT D V AM+KST GV +GA LSDAAG++L+DIR VS +LAELIQ ++ ST  QA 
Sbjct: 642 MIQADTRDVVVAMDKSTTGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAV 701

Query: 61  SANSVAHDIQNILSENEIIEQRREQVLFLFNELHDLAELLKNSVSRFRVTIS 112
           SAN VA  IQ IL+EN+IIEQ REQV  L+ EL   A  L+NSVSRFRVT+S
Sbjct: 702 SANGVAQQIQGILTENDIIEQSREQVSALYEELWAAARQLENSVSRFRVTVS 753


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.125    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 258,061
Number of extensions: 7422
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)